LXL04_031962 | RubberDandelionOmics

Gene overview

LXL04_031962

Reference: OH-1004 Chr: Chr07 Coordinates: 13860377-13870596 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

882 bp · LXL04_031962|LXL04_031962|OH1004|cDNA

ATGGCTGCGTCGCCTGCGTGCGTGAGTGAAGgctcgtttaggctcgcgagcctaaaaGAGCTTTGTTTATcaggctcggctcggctcGAATTAGGTTTAATCGATAACGATTGCTATCAGAAAATCATAAAGACAATCCTAATCACTCATTTCAAAGTGATTGAGTGCGACAAGACGTGCAACTGTAGCATTAGAAAGTTTGTCCAGTCTAGTCCTGTCCATGCTTCTGTGGTGGATCTTGCCACAGCGAACTCGATTAG...

CDS

Download CDS FASTA

882 bp · LXL04_031962|LXL04_031962|OH1004|CDS

ATGGCTGCGTCGCCTGCGTGCGTGAGTGAAGGCTCGTTTAGGCTCGCGAGCCTAAAAGAGCTTTGTTTATCAGGCTCGGCTCGGCTCGAATTAGGTTTAATCGATAACGATTGCTATCAGAAAATCATAAAGACAATCCTAATCACTCATTTCAAAGTGATTGAGTGCGACAAGACGTGCAACTGTAGCATTAGAAAGTTTGTCCAGTCTAGTCCTGTCCATGCTTCTGTGGTGGATCTTGCCACAGCGAACTCGATTAG...

Protein

Download Protein FASTA

293 aa · LXL04_031962|LXL04_031962|OH1004|PROTEIN

MAASPACVSEGSFRLASLKELCLSGSARLELGLIDNDCYQKIIKTILITHFKVIECDKTCNCSIRKFVQSSPVHASVVDLATANSISREEVRNLQESCRRWLQRRLAEVLLLRRLSRRSCCSDSSLTSVPIMPNVWKLGTVAIKKDLEYKRYKNREQQTMRLLDHPNFVLLKHCFLKNNTIIWFCCNICILVAYRYVPELLDEDKKANFIPFKVNGTFRVYVFGLQLATLISANSRRETAAKDCCEVSLPPPTVPVATGD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031962`
TK1151 ID	TkA08G138470
OH-1004 ID	LXL04_031962
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	94.700
Protein coverage (%)	TK1151 55.340 / OH-1004 19.454 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031962

Location Chr07:13860377-13870596 (-)

Description Similar to ASK5: Shaggy-related protein kinase epsilon

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g14640`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_031962 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006972 hyperosmotic response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0030154 cell differentiation Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G14640

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.396

Rank 1 · LXL04_031962 · OH-1004

Nucleus0.381

Rank 2 · LXL04_031962 · OH-1004

Mitochondrion0.163

Rank 3 · LXL04_031962 · OH-1004

Cell membrane0.120

Rank 4 · LXL04_031962 · OH-1004

Endoplasmic reticulum0.085

Rank 5 · LXL04_031962 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VZD5`	Arabidopsis thaliana	Shaggy-related protein kinase epsilon	58.333%	Swiss-Prot	weak database homology

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