Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1128 bp · LXL04_031959|LXL04_031959|OH1004|cDNA
ATGAAAAGGAACAGAGAAGACATGGAGATCGTCTGGCAAACTCCGGCCAACCCTCCGGAGCGCCATGATTATATCTTCCGTAACGGCATTCGTTATGTTAAACCCTACTACTTCGAATTCATTTCTCATGCTAAGGTTCGGTGGGCCGGGAAAACCATCGTGGATCTATTTGCTGACGAATTCAAAGGTCGAAACCGTGATTACTATGAATCTGCTGTTAAGTCTGGACGCATACAGGTAGATGGAAAAACAGTATCTAT...
1128 bp · LXL04_031959|LXL04_031959|OH1004|CDS
ATGAAAAGGAACAGAGAAGACATGGAGATCGTCTGGCAAACTCCGGCCAACCCTCCGGAGCGCCATGATTATATCTTCCGTAACGGCATTCGTTATGTTAAACCCTACTACTTCGAATTCATTTCTCATGCTAAGGTTCGGTGGGCCGGGAAAACCATCGTGGATCTATTTGCTGACGAATTCAAAGGTCGAAACCGTGATTACTATGAATCTGCTGTTAAGTCTGGACGCATACAGGTAGATGGAAAAACAGTATCTAT...
Protein
Download Protein FASTA375 aa · LXL04_031959|LXL04_031959|OH1004|PROTEIN
MKRNREDMEIVWQTPANPPERHDYIFRNGIRYVKPYYFEFISHAKVRWAGKTIVDLFADEFKGRNRDYYESAVKSGRIQVDGKTVSIYYRVQSSQKISHFLHRHEPPVMGLDVKILHKGEDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHDLAPLFPIHRLDRLVSGLLILARSASQADIFRQQIESGMVQKQYIAKVVGEFPENEQVVNLRVNFNAKEGISTVEPESTLEKVNGKSACTKFIRIHTNGKYSIVSCHP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_031959 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_031959 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:13809235-13811275 (+) | ||||||||||||
| Description | Similar to Os02g0512300: RNA pseudouridine synthase 7 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000455 enzyme-directed rRNA pseudouridine synthesis Biological Process GO:0006397 mRNA processing Biological Process GO:0031119 tRNA pseudouridine synthesis Biological Process GO:1990481 mRNA pseudouridine synthesis Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0003723 RNA binding Molecular Function GO:0009982 pseudouridine synthase activity Molecular Function GO:0160151 tRNA pseudouridine(32) synthase activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT5G51140 hsa:27079 mmu:271842 spo:2542607 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00849.28PseudoU_synth_2121-274 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_031959 | PF00849.28 | PseudoU_synth_2 | 121 | 274 | 6.4e-30 | 105.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.