LXL04_031943 | RubberDandelionOmics

Gene overview

LXL04_031943

Reference: OH-1004 Chr: Chr07 Coordinates: 13634602-13636844 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1224 bp · LXL04_031943|LXL04_031943|OH1004|cDNA

ATGAAAGAACCGTCGGAGACGAAGCACAGTAACCCTGATAATGTCCCAACCGAAAGGAACTCGAAGACAAAGGAGAAGAACAACGAATTTGAATTTTGTAAAGTATGCAAGCTCAATCACAATCAAGGTCGCCGCCATAACTACCTTCCTAACCACGTCAAATCGCTCTCATCTTTCCTATCTCGATTTCAATCCAAACTCTCCGATGTACGTTTATTTCTTAAGAACCCTAGCTCAATTCGTCCAGAGCTTGCATTTCG...

CDS

Download CDS FASTA

1224 bp · LXL04_031943|LXL04_031943|OH1004|CDS

ATGAAAGAACCGTCGGAGACGAAGCACAGTAACCCTGATAATGTCCCAACCGAAAGGAACTCGAAGACAAAGGAGAAGAACAACGAATTTGAATTTTGTAAAGTATGCAAGCTCAATCACAATCAAGGTCGCCGCCATAACTACCTTCCTAACCACGTCAAATCGCTCTCATCTTTCCTATCTCGATTTCAATCCAAACTCTCCGATGTACGTTTATTTCTTAAGAACCCTAGCTCAATTCGTCCAGAGCTTGCATTTCG...

Protein

Download Protein FASTA

407 aa · LXL04_031943|LXL04_031943|OH1004|PROTEIN

MKEPSETKHSNPDNVPTERNSKTKEKNNEFEFCKVCKLNHNQGRRHNYLPNHVKSLSSFLSRFQSKLSDVRLFLKNPSSIRPELAFRNRFWCVFCDIDVTEHGSSFACENGISHLASADHLKNLKSFMWKHGGGMNRVNAFRISEADLAKYEKKCISMKNKGASEQSRVPLTGPSNDIHNELKFDYVDNFDRSHNSKFPNGVLPLQNHTNENYQVFHSDLPGGYHDKSFLLASDAKPSNNSTAKSFLNEGYLNNRQREAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031943`
TK1151 ID	TkA08G137640
OH-1004 ID	LXL04_031943
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031943

Location Chr07:13634602-13636844 (+)

Description Similar to TTL: TITAN-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24900`	Key regulator for endosperm and embryo nuclear divisions.	An Arabidopsis gene encoding a C2H2-domain protein with alternatively spliced transcripts is essential for endosperm development.2012 · DOI: 10.1093/jxb/ers243

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031943 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009960 endosperm development Biological Process

GO:0005634 nucleus Cellular Component

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G24900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952

Rank 1 · LXL04_031943 · OH-1004

Cytoplasm0.095

Rank 2 · LXL04_031943 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_031943 · OH-1004

Endoplasmic reticulum0.017

Rank 4 · LXL04_031943 · OH-1004

Plastid0.016

Rank 5 · LXL04_031943 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14968.12CCDC8432-371 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031943	`PF14968.12`	CCDC84	32	371	2e-82	278.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JRR5`	Arabidopsis thaliana	TITAN-like protein	45.283%	Swiss-Prot	moderate database homology

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