LXL04_031611 | RubberDandelionOmics

Gene overview

LXL04_031611

Reference: OH-1004 Chr: Chr07 Coordinates: 8465605-8471749 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1140 bp · LXL04_031611|LXL04_031611|OH1004|cDNA

ATGACCCACCTCAAACCACCGCTATGTTACCTCCTCCTCCTCATCTCCGCCATAACAATCGCCACCGCCGCTGCCGCTGCCGCCACCTCTATTTCGGAACAGTTTAAAGAAGCTCCAAAATTCTACAACGCGCCAGAATGCCCCCACACCGACATTGACTACGACACCGACACTTTGACCACCTACGACGATTCCGCCGTCCACGTCGCCATGACCCTCGACGCCACCTACATCCGCGGATCAATGGCCGCCATCCTCTC...

CDS

Download CDS FASTA

1140 bp · LXL04_031611|LXL04_031611|OH1004|CDS

ATGACCCACCTCAAACCACCGCTATGTTACCTCCTCCTCCTCATCTCCGCCATAACAATCGCCACCGCCGCTGCCGCTGCCGCCACCTCTATTTCGGAACAGTTTAAAGAAGCTCCAAAATTCTACAACGCGCCAGAATGCCCCCACACCGACATTGACTACGACACCGACACTTTGACCACCTACGACGATTCCGCCGTCCACGTCGCCATGACCCTCGACGCCACCTACATCCGCGGATCAATGGCCGCCATCCTCTC...

Protein

Download Protein FASTA

379 aa · LXL04_031611|LXL04_031611|OH1004|PROTEIN

MTHLKPPLCYLLLLISAITIATAAAAAATSISEQFKEAPKFYNAPECPHTDIDYDTDTLTTYDDSAVHVAMTLDATYIRGSMAAILSVLQHSSCPQNIIFHFVTSASSDASLLRATISTSFPYLKFKIYRFDDSFVAGLISTSIRSALDCPLNYARSYLANILPPNVRKVVYLDSDLVLVDDIAKLAATPLGNDSVLAAPEYCNANFTFYFTPSFWSSPSLSLTFANRKACYFNTGVMVIDLDRWRAGGYTTKIEEWMEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031611`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031611

Location Chr07:8465605-8471749 (+)

Description Similar to GATL1: Probable galacturonosyltransferase-like 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g19300`	May participate in biosynthesis of the reducing-end tetrasaccharide primer of glucuronoxylan.	Mutation of a family 8 glycosyltransferase gene alters cell wall carbohydrate composition and causes a humidity-sensitive semi-sterile dwarf phenotype in Arabidopsis.2003 · DOI: 10.1023/b:plan.0000019074.60542.6c The GAOLAOZHUANGREN1 gene encodes a putative glycosyltransferase that is critical for normal development and carbohydrate metabolism.2004 · DOI: 10.1093/pcp/pch168 The PARVUS gene is expressed in cells undergoing secondary wall thickening and is essential for glucuronoxylan biosynthesis.2007 · DOI: 10.1093/pcp/pcm155
`At3g50760`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At4g02130`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At1g24170`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release
`At3g62660`	May be involved in pectin and/or xylans biosynthesis in cell walls.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031611 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010051 xylem and phloem pattern formation Biological Process

GO:0010417 glucuronoxylan biosynthetic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0048366 leaf development Biological Process

GO:0052386 cell wall thickening Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G19300

ath:AT1G24170

ath:AT3G50760

ath:AT3G62660

ath:AT4G02130

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.415

Rank 1 · LXL04_031611 · OH-1004

Extracellular0.148

Rank 2 · LXL04_031611 · OH-1004

Endoplasmic reticulum0.145

Rank 3 · LXL04_031611 · OH-1004

Cell membrane0.126

Rank 4 · LXL04_031611 · OH-1004

Lysosome / Vacuole0.087

Rank 5 · LXL04_031611 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01501.27Glyco_transf_868-326 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031611	`PF01501.27`	Glyco_transf_8	68	326	2.2e-48	165.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LN68`	Arabidopsis thaliana	Probable galacturonosyltransferase-like 1	76.900%	Swiss-Prot	strong database homology
`Q9S7G2`	Arabidopsis thaliana	Probable galacturonosyltransferase-like 2	69.164%	Swiss-Prot	strong database homology
`O04253`	Arabidopsis thaliana	Probable galacturonosyltransferase-like 6	61.728%	Swiss-Prot	strong database homology
`O48684`	Arabidopsis thaliana	Probable galacturonosyltransferase-like 8	59.621%	Swiss-Prot	strong database homology
`Q8VYF4`	Arabidopsis thaliana	Probable galacturonosyltransferase-like 7	67.021%	Swiss-Prot	strong database homology

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