LXL04_031607 | RubberDandelionOmics

Gene overview

LXL04_031607

Reference: OH-1004 Chr: Chr07 Coordinates: 8306871-8309144 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

867 bp · LXL04_031607|LXL04_031607|OH1004|cDNA

ATGTCTCCTCCATTTTCTCTTCCTCTCGCAGCTGAAAATGAATATTGGACAGATGAAGGCATCTTTACGTCCTTACAGAATTTCAAAACAGGAAAACCGCTACCTGCAAATGTAGATTCGGAACTAAATCCTTATCAGTATCGGCCCCAAGATCTACCTGGTGATCTGTGGTACTTTTGTTCGACGGTGAAAAAAGAATCAGATATCGGATTCTGGCAGGAAACAGGGGAGCCATGCGAGATATTCTCTAATTCCGCCAT...

CDS

Download CDS FASTA

867 bp · LXL04_031607|LXL04_031607|OH1004|CDS

ATGTCTCCTCCATTTTCTCTTCCTCTCGCAGCTGAAAATGAATATTGGACAGATGAAGGCATCTTTACGTCCTTACAGAATTTCAAAACAGGAAAACCGCTACCTGCAAATGTAGATTCGGAACTAAATCCTTATCAGTATCGGCCCCAAGATCTACCTGGTGATCTGTGGTACTTTTGTTCGACGGTGAAAAAAGAATCAGATATCGGATTCTGGCAGGAAACAGGGGAGCCATGCGAGATATTCTCTAATTCCGCCAT...

Protein

Download Protein FASTA

288 aa · LXL04_031607|LXL04_031607|OH1004|PROTEIN

MSPPFSLPLAAENEYWTDEGIFTSLQNFKTGKPLPANVDSELNPYQYRPQDLPGDLWYFCSTVKKESDIGFWQETGEPCEIFSNSAISGFRTTLRFYEGNAPHGRKTDWVMQEYRITEKYKTNVNDDHRALCRVFLAAENSSETECFLTGDYLELNDLIDDSGRSSMSTNSSCLTMTSDEYFDSMALLQQLDDDENMKDSSIIKFNLSAHVNSKSVICPTTTLSLKNESSEAKEENRNGSTSISSSSEEEKKKENVIKTK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031607`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031607

Location Chr07:8306871-8309144 (+)

Description Similar to NAC053: NAC domain-containing protein 53

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10500`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP).	A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.04932.x The Arabidopsis NAC transcription factor NTL4 participates in a positive feedback loop that induces programmed cell death under heat stress conditions.2014 · DOI: 10.1016/j.plantsci.2014.07.003
`At1g33060`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP).	No verified direct reference in this release
`At2g33480`	Transcription activator of the mannan synthase CSLA9.	No verified direct reference in this release
`At5g39610`	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3'.	The delayed leaf senescence mutants of Arabidopsis, ore1, ore3, and ore9 are tolerant to oxidative stress.2004 · DOI: 10.1093/pcp/pch110 Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis.2009 · DOI: 10.1126/science.1166386 Forward and reverse genetics to identify genes involved in the age-related resistance response in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1364-3703.2009.00557.x A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence.2010 · DOI: 10.1111/j.1365-313x.2010.04151.x ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana.2011 · DOI: 10.1093/mp/ssq080 NAC transcription factor ORE1 and senescence-induced BIFUNCTIONAL NUCLEASE1 (BFN1) constitute a regulatory cascade in Arabidopsis.2013 · DOI: 10.1093/mp/sst012 ORE1 balances leaf senescence against maintenance by antagonizing G2-like-mediated transcription.2013 · DOI: 10.1038/embor.2013.24

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0119966`	Transcription factor that functions as a regulator of the jasmonate (JA) signaling pathway.	Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus.2009 · DOI: 10.1111/j.1365-313x.2008.03712.x The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling.2010 · DOI: 10.1111/j.1365-313x.2009.04107.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031607 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009819 drought recovery Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010468 regulation of gene expression Biological Process

KEGG gene cross-reference

ath:AT1G33060

ath:AT2G33480

ath:AT3G10500

ath:AT5G39610

dosa:Os03g0119966

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.857

Rank 1 · LXL04_031607 · OH-1004

Cytoplasm0.171

Rank 2 · LXL04_031607 · OH-1004

Cell membrane0.085

Rank 3 · LXL04_031607 · OH-1004

Endoplasmic reticulum0.053

Rank 4 · LXL04_031607 · OH-1004

Plastid0.022

Rank 5 · LXL04_031607 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365.21NAM21-116 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031607	`PF02365.21`	NAM	21	116	3.4e-14	54.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q949N0`	Arabidopsis thaliana	NAC domain-containing protein 53	35.484%	Swiss-Prot	weak database homology
`B5X570`	Arabidopsis thaliana	NAC domain-containing protein 14	32.877%	Swiss-Prot	weak database homology
`O22798`	Arabidopsis thaliana	NAC domain-containing protein 41	33.793%	Swiss-Prot	weak database homology
`Q9FKA0`	Arabidopsis thaliana	NAC domain-containing protein 92	28.261%	Swiss-Prot	weak database homology
`Q8H045`	Oryza sativa subsp. japonica	NAC domain-containing protein 54	33.333%	Swiss-Prot	weak database homology

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