LXL04_031474 | RubberDandelionOmics

Gene overview

LXL04_031474

Reference: OH-1004 Chr: Chr07 Coordinates: 6490198-6491214 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · LXL04_031474|LXL04_031474|OH1004|cDNA

ATGTCAACTTCTCCATCTCTTACAACAACACAAGAATCAAAAGAAGATGCAGATTACAACAAGCTTTGTGAAGATCACAACCATTTGATAGAAACAATTCCCAAAAGAAATGGATGGAAAGAACAACACCTCTACAACTACAATGGCTTCTGGTTAAACCCCCACATCATCAAAAACAACTTAGTTGTTCATACCtatttcaaatctcaatccACCGACATCTTCTTAGCCTCCTTCATGAAGTCCGGCACCACCTGGCT...

CDS

Download CDS FASTA

1017 bp · LXL04_031474|LXL04_031474|OH1004|CDS

ATGTCAACTTCTCCATCTCTTACAACAACACAAGAATCAAAAGAAGATGCAGATTACAACAAGCTTTGTGAAGATCACAACCATTTGATAGAAACAATTCCCAAAAGAAATGGATGGAAAGAACAACACCTCTACAACTACAATGGCTTCTGGTTAAACCCCCACATCATCAAAAACAACTTAGTTGTTCATACCTATTTCAAATCTCAATCCACCGACATCTTCTTAGCCTCCTTCATGAAGTCCGGCACCACCTGGCT...

Protein

Download Protein FASTA

338 aa · LXL04_031474|LXL04_031474|OH1004|PROTEIN

MSTSPSLTTTQESKEDADYNKLCEDHNHLIETIPKRNGWKEQHLYNYNGFWLNPHIIKNNLVVHTYFKSQSTDIFLASFMKSGTTWLKALMFSTLNRHLYSFSDHFLLHHGPHSTFPLLDFETHPITDFTQLPAPRLFATHFPRTLLPPLITSCKIVYLCREPKDVLISKWHFMCKLRPKDMPPLSLEEAFELFCAGISDYGPFWEHVLSYWRASLENPEKILFLKYEEVKKQPEVVVRKLAAFMGKPFTAEEVEKGVVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031474`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031474

Location Chr07:6490198-6491214 (+)

Description Similar to SOT16: Cytosolic sulfotransferase 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74100`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfate conjugation of desulfo-glucosinolates (dsGSs), the final step in the biosynthesis of the glucosinolate core structure.	Desulfoglucosinolate sulfotransferases from Arabidopsis thaliana catalyze the final step in the biosynthesis of the glucosinolate core structure.2004 · DOI: 10.1074/jbc.m407681200 The three desulfoglucosinolate sulfotransferase proteins in Arabidopsis have different substrate specificities and are differentially expressed.2006 · DOI: 10.1111/j.1742-4658.2005.05048.x Kinetics and substrate specificities of desulfo-glucosinolate sulfotransferases in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1399-3054.2008.01182.x Modulation of sulfur metabolism enables efficient glucosinolate engineering.2011 · DOI: 10.1186/1472-6750-11-12
`At3g45080`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	No verified direct reference in this release
`At5g07010`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to specifically catalyze the sulfate conjugation of hydroxyjasmonates, with a preference for 12- hydroxyjasmonate over 11-hydroxyjasmonate.	Biochemical and molecular characterization of a hydroxyjasmonate sulfotransferase from Arabidopsis thaliana.2003 · DOI: 10.1074/jbc.m211943200
`At3g45070`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to specifically catalyze the sulfate conjugation of flavones and flavonols.	Biochemical and molecular characterization of flavonoid 7-sulfotransferase from Arabidopsis thaliana.2006 · DOI: 10.1016/j.plaphy.2006.10.004
`At5g43690`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031474 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009694 jasmonic acid metabolic process Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009806 lignan metabolic process Biological Process

GO:0009812 flavonoid metabolic process Biological Process

GO:0019761 glucosinolate biosynthetic process Biological Process

GO:0032260 response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance Biological Process

GO:0051923 sulfation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008146 sulfotransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G74100

ath:AT3G45070

ath:AT3G45080

ath:AT5G07010

ath:AT5G43690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.866

Rank 1 · LXL04_031474 · OH-1004

Nucleus0.265

Rank 2 · LXL04_031474 · OH-1004

Endoplasmic reticulum0.046

Rank 3 · LXL04_031474 · OH-1004

Peroxisome0.035

Rank 4 · LXL04_031474 · OH-1004

Mitochondrion0.031

Rank 5 · LXL04_031474 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00685.34Sulfotransfer_172-331 aa

PF13469.13Sulfotransfer_3155-250 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031474	`PF00685.34`	Sulfotransfer_1	72	331	1.3e-65	222.0
LXL04_031474	`PF13469.13`	Sulfotransfer_3	155	250	1.6e-07	32.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C9D0`	Arabidopsis thaliana	Cytosolic sulfotransferase 16	41.194%	Swiss-Prot	moderate database homology
`Q9M1V1`	Arabidopsis thaliana	Cytosolic sulfotransferase 6	43.653%	Swiss-Prot	moderate database homology
`Q8L5A7`	Arabidopsis thaliana	Cytosolic sulfotransferase 15	41.212%	Swiss-Prot	moderate database homology
`Q9M1V2`	Arabidopsis thaliana	Cytosolic sulfotransferase 5	43.574%	Swiss-Prot	moderate database homology
`Q9FG94`	Arabidopsis thaliana	Cytosolic sulfotransferase 1	44.985%	Swiss-Prot	moderate database homology

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