LXL04_031376 | RubberDandelionOmics

Gene overview

LXL04_031376

Reference: OH-1004 Chr: Chr07 Coordinates: 5173723-5174857 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

924 bp · LXL04_031376|LXL04_031376|OH1004|cDNA

ATGACCCTCAAAGGCGGCACCACCCAAGCATGCGCTGCCTGCAAATACCAACGAAAAAGATGCACCCCTGAGTGCGCACTTGCCCCCCACTTCCGCCCTGAACACACCGAAATCTTCAAAAATGCACACAAACTATTCGGTGTTAAAAACATCCTTAAAGTCCTCGAACAAATCGACCCCGCTCAAAGAAACGAAGCCATGCGTTCCATGATCTACCAAGCCAATATGCGGGACCGCTTCCCTGTTCACGGTTGCTACGG...

CDS

Download CDS FASTA

924 bp · LXL04_031376|LXL04_031376|OH1004|CDS

ATGACCCTCAAAGGCGGCACCACCCAAGCATGCGCTGCCTGCAAATACCAACGAAAAAGATGCACCCCTGAGTGCGCACTTGCCCCCCACTTCCGCCCTGAACACACCGAAATCTTCAAAAATGCACACAAACTATTCGGTGTTAAAAACATCCTTAAAGTCCTCGAACAAATCGACCCCGCTCAAAGAAACGAAGCCATGCGTTCCATGATCTACCAAGCCAATATGCGGGACCGCTTCCCTGTTCACGGTTGCTACGG...

Protein

Download Protein FASTA

307 aa · LXL04_031376|LXL04_031376|OH1004|PROTEIN

MTLKGGTTQACAACKYQRKRCTPECALAPHFRPEHTEIFKNAHKLFGVKNILKVLEQIDPAQRNEAMRSMIYQANMRDRFPVHGCYGIIVQLQLQIHQTEKELCEVLSQLEFFKNQRRQHEIVLSPENSRESQQLQLGIGVEQPAAALTLFQHEGGQTHLQQQQQQQFELPIPSYSGNKNGNDGYSNSGIHMDLKENTNMGNFVWGQQTYCNENDDGGGKGLVSLQSELVNSTHQLTIQDEVTHDYDEIYPFFDTIDDTQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031376`
TK1151 ID	TkA08G104010
OH-1004 ID	LXL04_031376
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031376

Location Chr07:5173723-5174857 (+)

Description Similar to LBD27: LOB domain-containing protein 27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47870`	LOB domain-containing protein 27.	No verified direct reference in this release
`At3g13850`	LOB domain-containing protein 22.	No verified direct reference in this release
`At5g63090`	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031376 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009555 pollen development Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0009786 regulation of asymmetric cell division Biological Process

GO:0010199 organ boundary specification between lateral organs and the meristem Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

GO:0001217 DNA-binding transcription repressor activity Molecular Function

KEGG gene cross-reference

ath:AT3G13850

ath:AT3G47870

ath:AT5G63090

zma:100037816

zma:732739

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.969

Rank 1 · LXL04_031376 · OH-1004

Cytoplasm0.089

Rank 2 · LXL04_031376 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_031376 · OH-1004

Endoplasmic reticulum0.017

Rank 4 · LXL04_031376 · OH-1004

Plastid0.011

Rank 5 · LXL04_031376 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03195.20LOB10-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031376	`PF03195.20`	LOB	10	105	1e-35	123.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9STS6`	Arabidopsis thaliana	LOB domain-containing protein 27	39.032%	Swiss-Prot	moderate database homology
`Q9LRW1`	Arabidopsis thaliana	LOB domain-containing protein 22	50.000%	Swiss-Prot	weak database homology
`Q9FML4`	Arabidopsis thaliana	Protein LATERAL ORGAN BOUNDARIES	48.387%	Swiss-Prot	weak database homology

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