LXL04_031311 | RubberDandelionOmics

Gene overview

LXL04_031311

Reference: OH-1004 Chr: Chr07 Coordinates: 4428841-4431457 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · LXL04_031311|LXL04_031311|OH1004|cDNA

ATGGACGTCAAAGATTCCACCACCGCCTCCGCCACCGCTCCTCCACAGTACCGCCGACCTCCTCGTCTTTCAGACGAATCCGACGACGTTAAACCGGCGAGTCCGACACCTATTACCGCTCAAAAGCCGGAACCCTTGTCTCAACCGAAACACGAAAAGGAACAACAACAGCACCAATCTGCCATTGCGGTTCCCTCCAAGGATCCTGATGCCTTGGACAGTGGTGGTGGAATCAGCTTTCTGAGTGGAAGCAAAGCTGC...

CDS

Download CDS FASTA

1017 bp · LXL04_031311|LXL04_031311|OH1004|CDS

ATGGACGTCAAAGATTCCACCACCGCCTCCGCCACCGCTCCTCCACAGTACCGCCGACCTCCTCGTCTTTCAGACGAATCCGACGACGTTAAACCGGCGAGTCCGACACCTATTACCGCTCAAAAGCCGGAACCCTTGTCTCAACCGAAACACGAAAAGGAACAACAACAGCACCAATCTGCCATTGCGGTTCCCTCCAAGGATCCTGATGCCTTGGACAGTGGTGGTGGAATCAGCTTTCTGAGTGGAAGCAAAGCTGC...

Protein

Download Protein FASTA

338 aa · LXL04_031311|LXL04_031311|OH1004|PROTEIN

MDVKDSTTASATAPPQYRRPPRLSDESDDVKPASPTPITAQKPEPLSQPKHEKEQQQHQSAIAVPSKDPDALDSGGGISFLSGSKAASFSYGYASFKGKRASMEDYFETTISEVDGQTVAFFGVFDGHGGSRTAEYLKDNLFNNLSGHPGFMKDTKTAIVESFRRTDADYLSGENPQQRDAGSTASTAVMIGNRILVANVGDSRVVASRAGSAIPLSNDHKPDRSDERERIEQAGGFIIWAGTWRVGGVLAVSRAFGDKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031311`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031311

Location Chr07:4428841-4431457 (-)

Description Similar to At1g43900: Probable protein phosphatase 2C 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g43900`	Probable protein phosphatase 2C 11.	No verified direct reference in this release
`At5g24940`	Probable protein phosphatase 2C 71.	No verified direct reference in this release
`At4g31750`	Protein phosphatase that modulates defense response to pathogenic bacteria, conferring resistance and promoting salicylic acid (SA) accumulation.	Arabidopsis proteins important for modulating defense responses to Pseudomonas syringae that secrete HopW1-1.2008 · DOI: 10.1111/j.1365-313x.2008.03439.x
`At5g10740`	Probable protein phosphatase 2C 69.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0149800`	Probable protein phosphatase 2C 10.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031311 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006470 protein dephosphorylation Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G43900

ath:AT4G31750

ath:AT5G10740

ath:AT5G24940

dosa:Os02g0149800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.546

Rank 1 · LXL04_031311 · OH-1004

Nucleus0.437

Rank 2 · LXL04_031311 · OH-1004

Cell membrane0.136

Rank 3 · LXL04_031311 · OH-1004

Endoplasmic reticulum0.065

Rank 4 · LXL04_031311 · OH-1004

Lysosome / Vacuole0.053

Rank 5 · LXL04_031311 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C92-328 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031311	`PF00481.27`	PP2C	92	328	1.1e-59	202.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZN9`	Arabidopsis thaliana	Probable protein phosphatase 2C 11	74.182%	Swiss-Prot	strong database homology
`Q4PSE8`	Arabidopsis thaliana	Probable protein phosphatase 2C 71	64.259%	Swiss-Prot	strong database homology
`Q8RXV3`	Arabidopsis thaliana	Probable protein phosphatase 2C 59	62.738%	Swiss-Prot	strong database homology
`Q8LAY8`	Arabidopsis thaliana	Probable protein phosphatase 2C 69	63.878%	Swiss-Prot	strong database homology
`Q67UX7`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 10	63.498%	Swiss-Prot	strong database homology

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