LXL04_031295 | RubberDandelionOmics

Gene overview

LXL04_031295

Reference: OH-1004 Chr: Chr07 Coordinates: 4299722-4309380 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4398 bp · LXL04_031295|LXL04_031295|OH1004|cDNA

ATGGGGGAAAGCCGCGAGGGCTCTGTTGCCGCAATGAAAACGATGGAAGAAGGTCAAAATCACCCAGAAAATGTCCATAAACGGATTAGTATTGAGGAACCTACGGAGAGGGAGGATGAAATCAGTGCCTTACCTGATTGCATCCTTGTTGAAATCCTCTCTCGTTTACCCTTTTCAAAAGATGCCATACGAACAGGTACACTCTCCAAGCGATGGGAACATCTTTGGACTTTGGTACCTACTCTCATTTTTAAGCTTTC...

CDS

Download CDS FASTA

4398 bp · LXL04_031295|LXL04_031295|OH1004|CDS

ATGGGGGAAAGCCGCGAGGGCTCTGTTGCCGCAATGAAAACGATGGAAGAAGGTCAAAATCACCCAGAAAATGTCCATAAACGGATTAGTATTGAGGAACCTACGGAGAGGGAGGATGAAATCAGTGCCTTACCTGATTGCATCCTTGTTGAAATCCTCTCTCGTTTACCCTTTTCAAAAGATGCCATACGAACAGGTACACTCTCCAAGCGATGGGAACATCTTTGGACTTTGGTACCTACTCTCATTTTTAAGCTTTC...

Protein

Download Protein FASTA

1465 aa · LXL04_031295|LXL04_031295|OH1004|PROTEIN

MGESREGSVAAMKTMEEGQNHPENVHKRISIEEPTEREDEISALPDCILVEILSRLPFSKDAIRTGTLSKRWEHLWTLVPTLIFKLSNQPYSRRIENPNTISESAKLVDRTLTQCRQVKLKKFKVQTIYHTQFESQYFNWIRHAINCYVEELALDFQYPGPQADLRLDQSNFFINSWFTDLRLTCFTLNPSGAISWKNLKSFCISSQNLDEHLIINILSGSPLLENLELEYYYEIKGYDDEMEAPYNSQWPQLKHLKKFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031295`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031295

Location Chr07:4299722-4309380 (-)

Description Similar to FBL25: F-box/LRR-repeat protein 25

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02920`	F-box/LRR-repeat protein 25.	No verified direct reference in this release
`At5g02930`	Putative F-box/LRR-repeat protein At5g02930.	No verified direct reference in this release
`At3g18150`	Putative F-box/LRR-repeat protein At3g18150.	No verified direct reference in this release
`At5g03100`	F-box protein At5g03100.	No verified direct reference in this release
`At1g49610`	Putative F-box protein At1g49610.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031295 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT5G02920

ath:AT5G02930

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.558

Rank 1 · LXL04_031295 · OH-1004

Cytoplasm0.538

Rank 2 · LXL04_031295 · OH-1004

Cell membrane0.055

Rank 3 · LXL04_031295 · OH-1004

Endoplasmic reticulum0.041

Rank 4 · LXL04_031295 · OH-1004

Mitochondrion0.041

Rank 5 · LXL04_031295 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box41-80 aa

PF23622.2LRR_At1g61320_AtMIF1117-235 aa

PF23622.2LRR_At1g61320_AtMIF1257-421 aa

PF24758.2LRR_At5g56370273-414 aa

PF00646.39F-box524-563 aa

PF23622.2LRR_At1g61320_AtMIF1740-935 aa

PF24758.2LRR_At5g56370756-903 aa

PF00646.39F-box1076-1114 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031295	`PF00646.39`	F-box	41	80	2.1e-14	53.5
LXL04_031295	`PF23622.2`	LRR_At1g61320_AtMIF1	117	235	2e-41	143.4
LXL04_031295	`PF23622.2`	LRR_At1g61320_AtMIF1	257	421	2e-41	143.4
LXL04_031295	`PF24758.2`	LRR_At5g56370	273	414	6.1e-44	151.1
LXL04_031295	`PF00646.39`	F-box	524	563	2.1e-14	53.5
LXL04_031295	`PF23622.2`	LRR_At1g61320_AtMIF1	740	935	2e-41	143.4
LXL04_031295	`PF24758.2`	LRR_At5g56370	756	903	6.1e-44	151.1
LXL04_031295	`PF00646.39`	F-box	1076	1114	2.1e-14	53.5
LXL04_031295	`PF23622.2`	LRR_At1g61320_AtMIF1	1248	1406	2e-41	143.4
LXL04_031295	`PF24758.2`	LRR_At5g56370	1260	1370	6.1e-44	151.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1PE04`	Arabidopsis thaliana	F-box/LRR-repeat protein 25	33.010%	Swiss-Prot	weak database homology
`Q9LYZ2`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At5g02930	31.156%	Swiss-Prot	weak database homology
`Q9LV26`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g18150	26.531%	Swiss-Prot	weak database homology
`Q501G5`	Arabidopsis thaliana	F-box protein At5g03100	34.826%	Swiss-Prot	weak database homology
`Q9FX89`	Arabidopsis thaliana	Putative F-box protein At1g49610	33.636%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card