LXL04_031279 | RubberDandelionOmics

Gene overview

LXL04_031279

Reference: OH-1004 Chr: Chr07 Coordinates: 3925975-3933497 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3504 bp · LXL04_031279|LXL04_031279|OH1004|cDNA

ATGGAGATGGAAGTAAGAGCAGTGGCAGGATTGGAAGGATGCTACGTTTCACTACCACTTCATCTGATTCAAACTCTTCAATCAACTTCTTCTGCTTCTCTGTTTTCTTTTCTAGCTCTTGAGCTTCGGTCAATCACAAACAATAATGATGTCTGGTACGTTGCTTGGTCTGGCTCCGCATCCTCTAGATCTTCAGCAATTGAGATTGCTCAGCAATTTGCAGAATGTCTTCATCTGCCAGATCATACAACTGTTCGAAT...

CDS

Download CDS FASTA

3504 bp · LXL04_031279|LXL04_031279|OH1004|CDS

ATGGAGATGGAAGTAAGAGCAGTGGCAGGATTGGAAGGATGCTACGTTTCACTACCACTTCATCTGATTCAAACTCTTCAATCAACTTCTTCTGCTTCTCTGTTTTCTTTTCTAGCTCTTGAGCTTCGGTCAATCACAAACAATAATGATGTCTGGTACGTTGCTTGGTCTGGCTCCGCATCCTCTAGATCTTCAGCAATTGAGATTGCTCAGCAATTTGCAGAATGTCTTCATCTGCCAGATCATACAACTGTTCGAAT...

Protein

Download Protein FASTA

1167 aa · LXL04_031279|LXL04_031279|OH1004|PROTEIN

MEMEVRAVAGLEGCYVSLPLHLIQTLQSTSSASLFSFLALELRSITNNNDVWYVAWSGSASSRSSAIEIAQQFAECLHLPDHTTVRIKAIPSLPKAKSVTIEPDTEDDWEVLELNAEHAEAAILKQAGIVHEGMRFPLWLHGHTTITFSVVSTDPKEPMVQLVPGTEVCVAPKRRRRSENSVVKALLRIQDGDSRFFHKLRVNDIEMGVVLTSAVFIHPETADVFSLDSLQHVVLEQRLVKKEKKANSTPKEVDNGVPTN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031279`
TK1151 ID	TkA08G099180
OH-1004 ID	LXL04_031279
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.100
Protein coverage (%)	TK1151 98.861 / OH-1004 98.800 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031279

Location Chr07:3925975-3933497 (-)

Description Similar to PEX1: Peroxisome biogenesis protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g08470`	Component of the PEX1-PEX6 AAA ATPase complex, a protein dislocase complex that mediates the ATP-dependent extraction of the PEX5 receptor from peroxisomal membranes, an essential step for PEX5 recycling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031279 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006625 protein targeting to peroxisome Biological Process

GO:0006635 fatty acid beta-oxidation Biological Process

GO:0007031 peroxisome organization Biological Process

GO:0016558 protein import into peroxisome matrix Biological Process

GO:0016562 protein import into peroxisome matrix, receptor recycling Biological Process

GO:0043335 protein unfolding Biological Process

GO:0060152 microtubule-based peroxisome localization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005778 peroxisomal membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT5G08470

hsa:5189

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.287

Rank 1 · LXL04_031279 · OH-1004

Nucleus0.276

Rank 2 · LXL04_031279 · OH-1004

Peroxisome0.198

Rank 3 · LXL04_031279 · OH-1004

Mitochondrion0.111

Rank 4 · LXL04_031279 · OH-1004

Endoplasmic reticulum0.105

Rank 5 · LXL04_031279 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09262.18PEX-1N97-172 aa

PF24883.3NPHP3_N567-668 aa

PF00004.36AAA575-715 aa

PF13191.13AAA_16856-912 aa

PF00004.36AAA858-986 aa

PF17862.8AAA_lid_31010-1046 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031279	`PF09262.18`	PEX-1N	97	172	1e-26	93.7
LXL04_031279	`PF24883.3`	NPHP3_N	567	668	2.6e-07	31.7
LXL04_031279	`PF00004.36`	AAA	575	715	1.2e-53	181.7
LXL04_031279	`PF13191.13`	AAA_16	856	912	1.2e-08	36.4
LXL04_031279	`PF00004.36`	AAA	858	986	1.2e-53	181.7
LXL04_031279	`PF17862.8`	AAA_lid_3	1010	1046	5.6e-11	42.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FNP1`	Arabidopsis thaliana	Peroxisomal ATPase PEX1	54.833%	Swiss-Prot	strong database homology

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