LXL04_031276 | RubberDandelionOmics

Gene overview

LXL04_031276

Reference: OH-1004 Chr: Chr07 Coordinates: 3883141-3885031 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

888 bp · LXL04_031276|LXL04_031276|OH1004|cDNA

ATGGCTTCCTGTCCTTATTTGAACTCTTCTACGATGTTATCGAAGCCCAAACATCCGAATGCTTCGTTTTGTCTCCATGAATTCCCCAATCCACAGCATTCATCATCATCGTCACTGTCATTCTCCGCCTCTCCTGTTGCTACTGTCAGTTCTGCTAGACGCCGGTGTAGGCAAACAAATCGACGGTCTTCCTTGATTTTGGCATCGATGGATAAATCTCGGGAGCCTTTGAAAATTATGATATCCGGAGCTCCTGCTTC...

CDS

Download CDS FASTA

888 bp · LXL04_031276|LXL04_031276|OH1004|CDS

ATGGCTTCCTGTCCTTATTTGAACTCTTCTACGATGTTATCGAAGCCCAAACATCCGAATGCTTCGTTTTGTCTCCATGAATTCCCCAATCCACAGCATTCATCATCATCGTCACTGTCATTCTCCGCCTCTCCTGTTGCTACTGTCAGTTCTGCTAGACGCCGGTGTAGGCAAACAAATCGACGGTCTTCCTTGATTTTGGCATCGATGGATAAATCTCGGGAGCCTTTGAAAATTATGATATCCGGAGCTCCTGCTTC...

Protein

Download Protein FASTA

295 aa · LXL04_031276|LXL04_031276|OH1004|PROTEIN

MASCPYLNSSTMLSKPKHPNASFCLHEFPNPQHSSSSSLSFSASPVATVSSARRRCRQTNRRSSLILASMDKSREPLKIMISGAPASGKGTQCELITSKYDLVHIAAGDLLRAEVAAGSANGKQAKEYMEKGQLVPDEIVVMMVKDRLSQPDSTEKGWLLDGYPRSSSQATALQSFGFHPDLFILLEVPQEILVDRVVGRRLDPVTGRIYHLTYSPPENEEIAARLTQRFDDTEEKVKLRLQTHNQNVESVLSMFEDITV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031276`
TK1151 ID	TkA08G099140
OH-1004 ID	LXL04_031276
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031276

Location Chr07:3883141-3885031 (-)

Description Similar to At5g47840: Adenylate kinase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47840`	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP.	No verified direct reference in this release
`At5g35170`	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0109300`	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP.	No verified direct reference in this release
`Os08g0288200`	Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031276 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0097009 energy homeostasis Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0004017 AMP kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G35170

ath:AT5G47840

dosa:Os08g0109300

dosa:Os08g0288200

osa:4345177

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.973

Rank 1 · LXL04_031276 · OH-1004

Mitochondrion0.051

Rank 2 · LXL04_031276 · OH-1004

Cytoplasm0.024

Rank 3 · LXL04_031276 · OH-1004

Nucleus0.019

Rank 4 · LXL04_031276 · OH-1004

Peroxisome0.013

Rank 5 · LXL04_031276 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00406.30ADK81-257 aa

PF13207.13AAA_1783-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031276	`PF00406.30`	ADK	81	257	1.1e-48	165.9
LXL04_031276	`PF13207.13`	AAA_17	83	201	2e-26	93.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FIJ7`	Arabidopsis thaliana	Adenylate kinase 2, chloroplastic	73.950%	Swiss-Prot	strong database homology
`Q8VYL1`	Arabidopsis thaliana	Adenylate kinase 5, chloroplastic	59.130%	Swiss-Prot	strong database homology
`Q6ZC69`	Oryza sativa subsp. japonica	Probable adenylate kinase 2, chloroplastic	63.534%	Swiss-Prot	strong database homology
`Q0J6P7`	Oryza sativa subsp. japonica	Probable adenylate kinase 5, chloroplastic	61.353%	Swiss-Prot	strong database homology

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