LXL04_031260 | RubberDandelionOmics

Gene overview

LXL04_031260

Reference: OH-1004 Chr: Chr07 Coordinates: 3396119-3398841 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1674 bp · LXL04_031260|LXL04_031260|OH1004|cDNA

ATGACCGCCATTGCTACTGCTGCAGCTCTATCTCTTCCAATATCGTTATCTCGATCATCTAAATTGAGCACCAAAAAGGGTGTTAGAGGAGGGTTTGTAGTGTTTGCAATATCAGCCAGTCCAGAAGGAGGTGGATTGGTGGACAAGAAAACCTCATGGGACACTCTATTCAATGTGGAAGAACCCAGATCCAAACTTCCACAAAGTAAAGGAAAATTCCTGGATGTAAATCAAGCATTTGAAGTAGCTAGATACGATAT...

CDS

Download CDS FASTA

1674 bp · LXL04_031260|LXL04_031260|OH1004|CDS

ATGACCGCCATTGCTACTGCTGCAGCTCTATCTCTTCCAATATCGTTATCTCGATCATCTAAATTGAGCACCAAAAAGGGTGTTAGAGGAGGGTTTGTAGTGTTTGCAATATCAGCCAGTCCAGAAGGAGGTGGATTGGTGGACAAGAAAACCTCATGGGACACTCTATTCAATGTGGAAGAACCCAGATCCAAACTTCCACAAAGTAAAGGAAAATTCCTGGATGTAAATCAAGCATTTGAAGTAGCTAGATACGATAT...

Protein

Download Protein FASTA

557 aa · LXL04_031260|LXL04_031260|OH1004|PROTEIN

MTAIATAAALSLPISLSRSSKLSTKKGVRGGFVVFAISASPEGGGLVDKKTSWDTLFNVEEPRSKLPQSKGKFLDVNQAFEVARYDIQYCDWRARQDLLTIMLLHEKVVDVLNPLARDYKSIGTMKKDLAELQQELAEAHKQMHISEERVAETLDKLAYMETLVNDRLLENRNTITTTSTETITSSSPSTSKPPLETPERKTKRKGLNVSGPVPPYHPNLKNFWYPVAFSRDLKEDTLMPIDCFEEPWVLFRGKDGKPGC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031260`
TK1151 ID	TkA08G097730
OH-1004 ID	LXL04_031260
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	91.500
Protein coverage (%)	TK1151 100.000 / OH-1004 57.271 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_031260

Location Chr07:3396119-3398841 (-)

Description Similar to CAO: Chlorophyllide a oxygenase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g44446`	Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0567400`	Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031260 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0015995 chlorophyll biosynthetic process Biological Process

GO:0045036 protein targeting to chloroplast Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0042651 thylakoid membrane Cellular Component

GO:0005506 iron ion binding Molecular Function

GO:0010277 chlorophyllide a oxygenase activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G44446

cre:CHLRE_01g043350v5

dosa:Os10g0567400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.965

Rank 1 · LXL04_031260 · OH-1004

Mitochondrion0.041

Rank 2 · LXL04_031260 · OH-1004

Nucleus0.022

Rank 3 · LXL04_031260 · OH-1004

Cytoplasm0.019

Rank 4 · LXL04_031260 · OH-1004

Cell membrane0.013

Rank 5 · LXL04_031260 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00355.33Rieske224-304 aa

PF19112.7VanA_C381-405 aa

PF19112.7VanA_C433-552 aa

PF08417.19PaO435-531 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031260	`PF00355.33`	Rieske	224	304	1.4e-24	86.5
LXL04_031260	`PF19112.7`	VanA_C	381	405	2.2e-15	58.0
LXL04_031260	`PF19112.7`	VanA_C	433	552	2.2e-15	58.0
LXL04_031260	`PF08417.19`	PaO	435	531	1.1e-17	64.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9MBA1`	Arabidopsis thaliana	Chlorophyllide a oxygenase, chloroplastic	71.275%	Swiss-Prot	strong database homology
`Q8S7E1`	Oryza sativa subsp. japonica	Chlorophyllide a oxygenase, chloroplastic	69.245%	Swiss-Prot	strong database homology

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