LXL04_031194 | RubberDandelionOmics

Gene overview

LXL04_031194

Reference: OH-1004 Chr: Chr07 Coordinates: 2192043-2193170 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1128 bp · LXL04_031194|LXL04_031194|OH1004|cDNA

ATGTTTTCTGTTCGAAGCAGCCATGGCCAAATTTCCAAGCCATTTCTCCTCCGTTCATCTTCCTATTTCATTAATCTTCTTTACTGCTCAACAACAACTTCTTCTCCACCCACCGATCTTCAACCACATTTCATGGTGGATTACCTCATCGATTCACTCGGGTTCACCAAACAAGCTGCCATCTCCGCCTCCACAAAGGTACGTCATTTAAAATCCACGAAAAACTCCCAGTCCGTCATCGATTTCCTTAGAAACTACAG...

CDS

Download CDS FASTA

1128 bp · LXL04_031194|LXL04_031194|OH1004|CDS

ATGTTTTCTGTTCGAAGCAGCCATGGCCAAATTTCCAAGCCATTTCTCCTCCGTTCATCTTCCTATTTCATTAATCTTCTTTACTGCTCAACAACAACTTCTTCTCCACCCACCGATCTTCAACCACATTTCATGGTGGATTACCTCATCGATTCACTCGGGTTCACCAAACAAGCTGCCATCTCCGCCTCCACAAAGGTACGTCATTTAAAATCCACGAAAAACTCCCAGTCCGTCATCGATTTCCTTAGAAACTACAG...

Protein

Download Protein FASTA

375 aa · LXL04_031194|LXL04_031194|OH1004|PROTEIN

MFSVRSSHGQISKPFLLRSSSYFINLLYCSTTTSSPPTDLQPHFMVDYLIDSLGFTKQAAISASTKVRHLKSTKNSQSVIDFLRNYSLSETDIKSLVLSHPQILLRKVDKTLEPKFKILSEIGFSGPDIVAVIKKDPNLLVRGLHTSIIPAINLLRKFLGSKEKIVKAIKISHWPFYGKFFKSNVLLLEKHGVSVKDIGRIILRNPRLVTQSPVRVEEKLLEVEKEFGITPCSNMFSYGFSAVCSMKQPKLQKKFEIFKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031194`
TK1151 ID	TkAUNG051820
OH-1004 ID	LXL04_031194
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	98.800
Protein coverage (%)	TK1151 94.152 / OH-1004 85.867 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031194

Location Chr07:2192043-2193170 (+)

Description Similar to MTERF6: Transcription termination factor MTERF6, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38160`	Transcription termination factor essential for chloroplast development.	No verified direct reference in this release
`At4g14605`	Transcription termination factor required for processing and steady-state levels of plastid transcripts.	Arabidopsis MDA1, a nuclear-encoded protein, functions in chloroplast development and abiotic stress responses.2012 · DOI: 10.1371/journal.pone.0042924 mTERF5 Acts as a Transcriptional Pausing Factor to Positively Regulate Transcription of Chloroplast psbEFLJ.2019 · DOI: 10.1016/j.molp.2019.05.007

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031194 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006353 DNA-templated transcription termination Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0008033 tRNA processing Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042793 plastid transcription Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0042651 thylakoid membrane Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G14605

ath:AT4G38160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.773

Rank 1 · LXL04_031194 · OH-1004

Plastid0.137

Rank 2 · LXL04_031194 · OH-1004

Nucleus0.034

Rank 3 · LXL04_031194 · OH-1004

Cytoplasm0.033

Rank 4 · LXL04_031194 · OH-1004

Cell membrane0.008

Rank 5 · LXL04_031194 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02536.20mTERF77-169 aa

PF02536.20mTERF181-349 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031194	`PF02536.20`	mTERF	77	169	2.2e-32	113.0
LXL04_031194	`PF02536.20`	mTERF	181	349	2.2e-32	113.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SZL6`	Arabidopsis thaliana	Transcription termination factor MTERF6, chloroplastic/mitochondrial	34.091%	Swiss-Prot	weak database homology
`F4JVI3`	Arabidopsis thaliana	Transcription termination factor MTERF5, chloroplastic	22.857%	Swiss-Prot	weak database homology

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