LXL04_031175 | RubberDandelionOmics

Gene overview

LXL04_031175

Reference: OH-1004 Chr: Chr07 Coordinates: 1845432-1846424 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

993 bp · LXL04_031175|LXL04_031175|OH1004|cDNA

ATGACGTCAGCAACAATGGAGTTCTGGAACACAACCGGAAGTTTCCTGCAGTCGTCGGCCGGCGGTGAGCTCATGGAAGCACTTGAACCTTTTTACAAAAGTGCTCCGGTAGattaccaaaataccctccCTTTCTCTTCTCCCTCTCCTTCAACTTCTTATTCATTCCCTTCCTCTTCATTTTCTCCATCTCCTCCTCATTCATATCCTTCTTCGTCTTTTTCaccttctccttcttcctctATGAACCAACAATACAA...

CDS

Download CDS FASTA

993 bp · LXL04_031175|LXL04_031175|OH1004|CDS

ATGACGTCAGCAACAATGGAGTTCTGGAACACAACCGGAAGTTTCCTGCAGTCGTCGGCCGGCGGTGAGCTCATGGAAGCACTTGAACCTTTTTACAAAAGTGCTCCGGTAGATTACCAAAATACCCTCCCTTTCTCTTCTCCCTCTCCTTCAACTTCTTATTCATTCCCTTCCTCTTCATTTTCTCCATCTCCTCCTCATTCATATCCTTCTTCGTCTTTTTCACCTTCTCCTTCTTCCTCTATGAACCAACAATACAA...

Protein

Download Protein FASTA

330 aa · LXL04_031175|LXL04_031175|OH1004|PROTEIN

MTSATMEFWNTTGSFLQSSAGGELMEALEPFYKSAPVDYQNTLPFSSPSPSTSYSFPSSSFSPSPPHSYPSSSFSPSPSSSMNQQYNLDYLSHGFSTPDPFYYQLPVSSVGLKQLNPAQIHQIQSQIHFPNNGSAHLCPKPVPMKQSGSPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDSAEEAALAYDNAAYKLRGENARLNFPHLRHNWSQNGGDYKPLHSSVDAKLQSICQTLAEGKSIDGSKKSRQSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031175`
TK1151 ID	TkA08G092090
OH-1004 ID	LXL04_031175
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031175

Location Chr07:1845432-1846424 (-)

Description Similar to RAP2-4: Ethylene-responsive transcription factor RAP2-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g78080`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At4g39780`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g22190`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g65130`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At2g22200`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031175 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010116 positive regulation of abscisic acid biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT1G22190

ath:AT1G78080

ath:AT2G22200

ath:AT4G39780

ath:AT5G65130

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.962

Rank 1 · LXL04_031175 · OH-1004

Cytoplasm0.117

Rank 2 · LXL04_031175 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_031175 · OH-1004

Endoplasmic reticulum0.018

Rank 4 · LXL04_031175 · OH-1004

Plastid0.013

Rank 5 · LXL04_031175 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP2156-205 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031175	`PF00847.27`	AP2	156	205	1.5e-14	54.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H1E4`	Arabidopsis thaliana	Ethylene-responsive transcription factor RAP2-4	49.441%	Swiss-Prot	moderate database homology
`O65665`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF060	55.702%	Swiss-Prot	moderate database homology
`Q9LM15`	Arabidopsis thaliana	Ethylene-responsive transcription factor RAP2-13	60.870%	Swiss-Prot	moderate database homology
`Q9FJQ2`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF057	46.639%	Swiss-Prot	moderate database homology
`Q9SIE4`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF056	45.492%	Swiss-Prot	moderate database homology

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