LXL04_031126 | RubberDandelionOmics

Gene overview

LXL04_031126

Reference: OH-1004 Chr: Chr07 Coordinates: 939328-942525 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1722 bp · LXL04_031126|LXL04_031126|OH1004|cDNA

ATGATCAAAGTAGGAAAACTCATGAACAAAGAAAGAGGCCACGCCACAGTTGCTTTTGCAAGAAGCTGGAAGAAGTTTCCACCGTTAAAACATGTTGCCATTGTTTGGCAAACCAAGGCCATGATATTGACGTACTCTTCTTCTTTCATCACTCATTTACTCGCACTCCCTCCAGCGTCCACTTCTACTTCTACTGGAGCCGTATCTTCTTCCCTACTTCATCGATCCCCTCAGGGTTCTTTTGGTTCGATTTTGAGGTA...

CDS

Download CDS FASTA

1722 bp · LXL04_031126|LXL04_031126|OH1004|CDS

ATGATCAAAGTAGGAAAACTCATGAACAAAGAAAGAGGCCACGCCACAGTTGCTTTTGCAAGAAGCTGGAAGAAGTTTCCACCGTTAAAACATGTTGCCATTGTTTGGCAAACCAAGGCCATGATATTGACGTACTCTTCTTCTTTCATCACTCATTTACTCGCACTCCCTCCAGCGTCCACTTCTACTTCTACTGGAGCCGTATCTTCTTCCCTACTTCATCGATCCCCTCAGGGTTCTTTTGGTTCGATTTTGAGGTA...

Protein

Download Protein FASTA

573 aa · LXL04_031126|LXL04_031126|OH1004|PROTEIN

MIKVGKLMNKERGHATVAFARSWKKFPPLKHVAIVWQTKAMILTYSSSFITHLLALPPASTSTSTGAVSSSLLHRSPQGSFGSILRYKLRSYCSAPVNRGEFMASNIKVVQNPDSISYLNQREAAEVDEILMGPLGFSVDQLMELAGLSVATAIAEVYNVKDYNRVLAICGPGNNGGDGLVVARHLYHFGYKPFVCYPKRTAKPLYTGLVTQLESLGIPFLSVDDLPMNLSEDFNILVDAMFGFSFHGTPRPPFDDLIKR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031126`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031126

Location Chr07:939328-942525 (-)

Description Similar to PPOX1: Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49970`	Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).	Identification of a pyridoxine (pyridoxamine) 5'-phosphate oxidase from Arabidopsis thaliana.2007 · DOI: 10.1016/j.febslet.2006.12.028 Vitamer levels, stress response, enzyme activity, and gene regulation of Arabidopsis lines mutant in the pyridoxine/pyridoxamine 5'-phosphate oxidase (PDX3) and the pyridoxal kinase (SOS4) genes involved in the vitamin B6 salvage pathway.2007 · DOI: 10.1104/pp.107.105189

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031126 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006739 NADP+ metabolic process Biological Process

GO:0006869 lipid transport Biological Process

GO:0008615 pyridoxine biosynthetic process Biological Process

GO:0010874 regulation of cholesterol efflux Biological Process

GO:0019674 NAD+ metabolic process Biological Process

GO:0031580 membrane raft distribution Biological Process

GO:0046496 nicotinamide nucleotide metabolic process Biological Process

GO:0110051 metabolite repair Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

amr:AM1_4597

ath:AT5G49970

mmu:246703

rno:295229

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.837

Rank 1 · LXL04_031126 · OH-1004

Mitochondrion0.146

Rank 2 · LXL04_031126 · OH-1004

Cytoplasm0.128

Rank 3 · LXL04_031126 · OH-1004

Peroxisome0.060

Rank 4 · LXL04_031126 · OH-1004

Nucleus0.059

Rank 5 · LXL04_031126 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03853.22YjeF_N140-312 aa

PF01243.28PNPOx_N389-513 aa

PF10590.15PNP_phzG_C529-573 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031126	`PF03853.22`	YjeF_N	140	312	3.6e-36	125.4
LXL04_031126	`PF01243.28`	PNPOx_N	389	513	2e-28	99.8
LXL04_031126	`PF10590.15`	PNP_phzG_C	529	573	4.3e-19	68.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LTX3`	Arabidopsis thaliana	Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic	68.107%	Swiss-Prot	strong database homology

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