Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1266 bp · LXL04_031048|LXL04_031048|OH1004|cDNA
ATGAGGTTGTTGTTAATGGTGCTGGAAATAATGGTGTTTCTAACGGCTAACACACATGGAGTGTTTGGGATAAGATTTGTGATAGATAGGAGAGAGTGTTTATCACAAAAATTCGAGTATGGTGCAAAAGTTCGATTTTCTTTTGTGGTCATTAACGTTGAAGATCATGATCATTGGCTCTATACGGAATATCCCATCAATCTTGTGGTGAAGGGGCCAAAAGGTGAACAAATTCGCGATTTCCATGAAAAAATGAGTGG...
1266 bp · LXL04_031048|LXL04_031048|OH1004|CDS
ATGAGGTTGTTGTTAATGGTGCTGGAAATAATGGTGTTTCTAACGGCTAACACACATGGAGTGTTTGGGATAAGATTTGTGATAGATAGGAGAGAGTGTTTATCACAAAAATTCGAGTATGGTGCAAAAGTTCGATTTTCTTTTGTGGTCATTAACGTTGAAGATCATGATCATTGGCTCTATACGGAATATCCCATCAATCTTGTGGTGAAGGGGCCAAAAGGTGAACAAATTCGCGATTTCCATGAAAAAATGAGTGG...
Protein
Download Protein FASTA421 aa · LXL04_031048|LXL04_031048|OH1004|PROTEIN
MRLLLMVLEIMVFLTANTHGVFGIRFVIDRRECLSQKFEYGAKVRFSFVVINVEDHDHWLYTEYPINLVVKGPKGEQIRDFHEKMSGKSDFVVDNEGVYQFCFSNKSPYQETVDFDVHSSFLYSDVEHVKDEHFNPILEHISKLEDALRNIQFEQHWLQAEAERHAIINEKMSKRVMHKALGESAALIGSSILQVYLLQRLFQRKLGMSRMRISSITVAAVFMVLLTANIGEVLGIRFVIDRDECFSHKSEYGATVRFSF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_031048 |
|---|---|
| TK1151 ID | TkA04G344940 |
| OH-1004 ID | LXL04_031048 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 35.400 |
| Protein coverage (%) | TK1151 45.455 / OH-1004 15.439Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_031048 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:127225186-127228382 (-) | |||||||||
| Description | Similar to At3g07680: Transmembrane emp24 domain-containing protein p24beta2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0007030 Golgi organization Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005793 endoplasmic reticulum-Golgi intermediate compartment Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0030134 COPII-coated ER to Golgi transport vesicle Cellular Component GO:0030659 cytoplasmic vesicle membrane Cellular Component GO:0032580 Golgi cisterna membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G07680 ath:AT3G22845 nve:5502470 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01105.30EMP24_GP25L30-203 aaPF01105.30EMP24_GP25L243-413 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_031048 | PF01105.30 | EMP24_GP25L | 30 | 203 | 1.7e-60 | 204.9 |
| LXL04_031048 | PF01105.30 | EMP24_GP25L | 243 | 413 | 1.7e-60 | 204.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.