LXL04_030739 | RubberDandelionOmics

Gene overview

LXL04_030739

Reference: OH-1004 Chr: Chr06 Coordinates: 121758739-121760450 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

876 bp · LXL04_030739|LXL04_030739|OH1004|cDNA

ATGAAAAAGGCTTTGAAAGCAACGAGAGAGAATTCATATTGCACAAGAAGCCACCGCCACCACTCTCACACCCCCTTTGTTTTCATCTCCTCCTTTGTTATCTTCTGCTACTTAATTCTTATGTCAGGAGAGAGAAAAAGTGATGATCATGATCATGAGATAATGGAAATCGAAGAAGAAACCTCACGCCACAGCTGGCGGCGAGTCATGTCGCCGGAGATTGTGGAGGTCGAAGAGCACGAGAGCCGGAGCGCCATTAC...

CDS

Download CDS FASTA

876 bp · LXL04_030739|LXL04_030739|OH1004|CDS

ATGAAAAAGGCTTTGAAAGCAACGAGAGAGAATTCATATTGCACAAGAAGCCACCGCCACCACTCTCACACCCCCTTTGTTTTCATCTCCTCCTTTGTTATCTTCTGCTACTTAATTCTTATGTCAGGAGAGAGAAAAAGTGATGATCATGATCATGAGATAATGGAAATCGAAGAAGAAACCTCACGCCACAGCTGGCGGCGAGTCATGTCGCCGGAGATTGTGGAGGTCGAAGAGCACGAGAGCCGGAGCGCCATTAC...

Protein

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291 aa · LXL04_030739|LXL04_030739|OH1004|PROTEIN

MKKALKATRENSYCTRSHRHHSHTPFVFISSFVIFCYLILMSGERKSDDHDHEIMEIEEETSRHSWRRVMSPEIVEVEEHESRSAITRDAVDVFVAVGKNDLDVVKWAVDHLVSPGARVYLVHVFPPVTHIQTPVGKLSRSQLSKDQVQIYINEENNKRRNLLQKYIRLCTDAKIVVETMLLESNTTTKAILDLIQVVNITSLVIGTKRSPSLRRLRKGPGKGEFIKKNAPSFCEVSIVCNGKQVTSSQPRQIVGISPSN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030739`
TK1151 ID	TkA07G427180
OH-1004 ID	LXL04_030739
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 98.282 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030739

Location Chr06:121758739-121760450 (-)

Description Similar to PUB36: U-box domain-containing protein 36

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61390`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At2g45910`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At5g61550`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At4g25160`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030739 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0061630 ubiquitin protein ligase activity Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G45910

ath:AT3G61390

ath:AT4G25160

ath:AT5G61550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.448

Rank 1 · LXL04_030739 · OH-1004

Cytoplasm0.351

Rank 2 · LXL04_030739 · OH-1004

Nucleus0.336

Rank 3 · LXL04_030739 · OH-1004

Endoplasmic reticulum0.068

Rank 4 · LXL04_030739 · OH-1004

Lysosome / Vacuole0.041

Rank 5 · LXL04_030739 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00582.33Usp101-217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030739	`PF00582.33`	Usp	101	217	2.1e-07	32.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GZ84`	Arabidopsis thaliana	U-box domain-containing protein 36	27.273%	Swiss-Prot	weak database homology
`Q8GUH1`	Arabidopsis thaliana	U-box domain-containing protein 33	27.742%	Swiss-Prot	weak database homology
`Q9FKG6`	Arabidopsis thaliana	U-box domain-containing protein 52	30.588%	Swiss-Prot	moderate database homology
`Q9SW11`	Arabidopsis thaliana	U-box domain-containing protein 35	28.276%	Swiss-Prot	weak database homology

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