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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_030614
Reference: OH-1004 Chr: Chr06 Coordinates: 119572821-119574770 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1950 bp · LXL04_030614|LXL04_030614|OH1004|cDNA

ATGAATCTGATTCATGGAAGAAATCACCCAACCTGCAAGACGATGAAGATTTCTGCCATTAAAACCAAGTTCTCACGCACCAGATATCTTTCTCCCCTCTCTTCAGCTTCCTCATTTTCATCTTTTCAGTCGAACCTCGCACACAAAATCCTAAACTCTAGTTCCGCAAGTGAAGCGCTTCAGTTGTATTACTCATCTTTCACGAACACCGATCCCACCAAGAATTTAAAACTGCATTCAGCAACCATCCATTTCTTAAC...

CDS

Download CDS FASTA

1950 bp · LXL04_030614|LXL04_030614|OH1004|CDS

ATGAATCTGATTCATGGAAGAAATCACCCAACCTGCAAGACGATGAAGATTTCTGCCATTAAAACCAAGTTCTCACGCACCAGATATCTTTCTCCCCTCTCTTCAGCTTCCTCATTTTCATCTTTTCAGTCGAACCTCGCACACAAAATCCTAAACTCTAGTTCCGCAAGTGAAGCGCTTCAGTTGTATTACTCATCTTTCACGAACACCGATCCCACCAAGAATTTAAAACTGCATTCAGCAACCATCCATTTCTTAAC...

Protein

Download Protein FASTA

649 aa · LXL04_030614|LXL04_030614|OH1004|PROTEIN

MNLIHGRNHPTCKTMKISAIKTKFSRTRYLSPLSSASSFSSFQSNLAHKILNSSSASEALQLYYSSFTNTDPTKNLKLHSATIHFLTNARLYLKARCLIKDLIEALNRSCSPHRVCSLLFQALNHPELTQPKTNVFGVLMTALTELGFVDEAYWVLMKTDELPPLQVCNRILNGFVKVRRFNAMWEVHKHITSHHISPNVVTYGILIDACCHEGDIHKARNLFDEMLERGMNPNVFIYTTFIRGLCCEGRMLEAESMFAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_030614
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_030614
LocationChr06:119572821-119574770 (-)
DescriptionSimilar to At5g61400: Pentatricopeptide repeat-containing protein At5g61400
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g61400 Pentatricopeptide repeat-containing protein At5g61400. No verified direct reference in this release
At2g02150 Putative pentatricopeptide repeat-containing protein At2g02150. No verified direct reference in this release
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release
At3g22470 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial. No verified direct reference in this release
At1g62590 Pentatricopeptide repeat-containing protein At1g62590. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030614 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000963 mitochondrial RNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0090615 mitochondrial mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0036002 pre-mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G02150
ath:AT5G61400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.782
Rank 1 · LXL04_030614 · OH-1004
Plastid0.116
Rank 2 · LXL04_030614 · OH-1004
Nucleus0.047
Rank 3 · LXL04_030614 · OH-1004
Cytoplasm0.037
Rank 4 · LXL04_030614 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_030614 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N156-364 aa
PF13812.13PPR_3167-211 aa
PF13041.13PPR_2168-212 aa
PF23276.3TPR_24168-296 aa
PF12854.14PPR_1196-226 aa
PF13812.13PPR_3196-242 aa
PF13041.13PPR_2198-246 aa
PF01535.27PPR201-230 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_030614PF29070.1MSC6_N1563645.1e-2899.0
LXL04_030614PF13812.13PPR_31672116.7e-53177.4
LXL04_030614PF13041.13PPR_21682125.7e-125408.1
LXL04_030614PF23276.3TPR_241682963.5e-2382.7
LXL04_030614PF12854.14PPR_11962266.1e-104340.1
LXL04_030614PF13812.13PPR_31962426.7e-53177.4
LXL04_030614PF13041.13PPR_21982465.7e-125408.1
LXL04_030614PF01535.27PPR2012309.4e-86277.0
LXL04_030614PF17177.11PPR_long2173032.6e-2693.0
LXL04_030614PF13812.13PPR_32222786.7e-53177.4
LXL04_030614PF12854.14PPR_12292616.1e-104340.1
LXL04_030614PF13041.13PPR_22332825.7e-125408.1
LXL04_030614PF01535.27PPR2372659.4e-86277.0
LXL04_030614PF13812.13PPR_32573156.7e-53177.4
LXL04_030614PF12854.14PPR_12652956.1e-104340.1
LXL04_030614PF13041.13PPR_22723155.7e-125408.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FLJ4Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g6140045.854%Swiss-Protmoderate database homology
P0C894Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At2g0215031.966%Swiss-Protmoderate database homology
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971030.521%Swiss-Protmoderate database homology
Q6NQ83Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g22470, mitochondrial33.487%Swiss-Protmoderate database homology
Q9SXD8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g6259030.452%Swiss-Protmoderate database homology

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