LXL04_030559 | RubberDandelionOmics

Gene overview

LXL04_030559

Reference: OH-1004 Chr: Chr06 Coordinates: 118498338-118501690 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

891 bp · LXL04_030559|LXL04_030559|OH1004|cDNA

ATGCTGAATTCGACCATATCGATTGTCGTCGCGTTGATTAGCTTCATGTTCATGGCTGTTTTTGAAGTTAATCGAGCTCAAGAACTCGCTCCTTCCCCTGCTCCGACTCTGCCGTCTAACGATGGCGCAGCGATCGATCAAGGGATTGCTTATCTTCTTCTGCTTGTGGCACTCGCAATCATATATCTGCTGGCATTCTTTGATCTCATCGATTTTGCATCTGGGTCTGCTTCCATTTTTGATTTCGTGCAAAAATCTCA...

CDS

Download CDS FASTA

891 bp · LXL04_030559|LXL04_030559|OH1004|CDS

ATGCTGAATTCGACCATATCGATTGTCGTCGCGTTGATTAGCTTCATGTTCATGGCTGTTTTTGAAGTTAATCGAGCTCAAGAACTCGCTCCTTCCCCTGCTCCGACTCTGCCGTCTAACGATGGCGCAGCGATCGATCAAGGGATTGCTTATCTTCTTCTGCTTGTGGCACTCGCAATCATATATCTGCTGGCATTCTTTGATCTCATCGATTTTGCATCTGGGTCTGCTTCCATTTTTGATTTCGTGCAAAAATCTCA...

Protein

Download Protein FASTA

296 aa · LXL04_030559|LXL04_030559|OH1004|PROTEIN

MLNSTISIVVALISFMFMAVFEVNRAQELAPSPAPTLPSNDGAAIDQGIAYLLLLVALAIIYLLAFFDLIDFASGSASIFDFVQKSHDFENIADAFKRDTRSFLKEIDVWGRCPNSDDYVVYICFGSRGTLSENQMSSLASALEISNLDFILCVKASDLCFLPSGGFVVIGWAPQLVILRHRAVGSFVNYRYANEKLLADELGVLEIKAPRTFTHTCFTPIKTANFVYLSNKNSEFWNVSHSVELARSLDESLCCDRPEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030559`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030559

Location Chr06:118498338-118501690 (+)

Description Similar to UGT89B1: Flavonol 3-O-glucosyltransferase UGT89B1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73880`	Possesses quercetin 3-O-glucosyltransferase, 7-O-glucosyltransferase and 4'-O-glucosyltransferase activities in vitro.	No verified direct reference in this release
`At1g06000`	May catalyze rhamnosyl transfer to flavonols.	Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics.2007 · DOI: 10.1074/jbc.m611498200 Regioselective synthesis of flavonoid bisglycosides using Escherichia coli harboring two glycosyltransferases.2013 · DOI: 10.1007/s00253-013-4844-7 Expanded acceptor substrates flexibility study of flavonol 7-O-rhamnosyltransferase, AtUGT89C1 from Arabidopsis thaliana.2015 · DOI: 10.1016/j.carres.2015.09.010 7-Rhamnosylated Flavonols Modulate Homeostasis of the Plant Hormone Auxin and Affect Plant Development.2016 · DOI: 10.1074/jbc.m115.701565 Crystal structures of rhamnosyltransferase UGT89C1 from Arabidopsis thaliana reveal the molecular basis of sugar donor specificity for UDP-β-l-rhamnose and rhamnosylation mechanism.2019 · DOI: 10.1111/tpj.14321
`At2g43820`	Glycosyltransferase that glucosylates benzoic acid and derivatives.	Glucose conjugation of anthranilate by the Arabidopsis UGT74F2 glucosyltransferase is required for tryptophan mutant blue fluorescence.2003 · DOI: 10.1074/jbc.m211822200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030559 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009696 salicylic acid metabolic process Biological Process

GO:0010030 positive regulation of seed germination Biological Process

GO:0016104 triterpenoid biosynthetic process Biological Process

GO:0016135 saponin biosynthetic process Biological Process

GO:0018874 benzoate metabolic process Biological Process

GO:0046482 para-aminobenzoic acid metabolic process Biological Process

GO:0051555 flavonol biosynthetic process Biological Process

GO:1901734 quercetin biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G06000

ath:AT1G73880

ath:AT2G43820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.363

Rank 1 · LXL04_030559 · OH-1004

Cytoplasm0.175

Rank 2 · LXL04_030559 · OH-1004

Lysosome / Vacuole0.132

Rank 3 · LXL04_030559 · OH-1004

Plastid0.117

Rank 4 · LXL04_030559 · OH-1004

Nucleus0.112

Rank 5 · LXL04_030559 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06376.18AGP30-64 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030559	`PF06376.18`	AGP	30	64	6.7e-14	52.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C9B0`	Arabidopsis thaliana	Flavonol 3-O-glucosyltransferase UGT89B1	32.984%	Swiss-Prot	moderate database homology
`Q9LNE6`	Arabidopsis thaliana	Flavonol 7-O-rhamnosyltransferase	34.653%	Swiss-Prot	moderate database homology
`O22822`	Arabidopsis thaliana	UDP-glycosyltransferase 74F2	29.032%	Swiss-Prot	weak database homology

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