LXL04_030555 | RubberDandelionOmics

Gene overview

LXL04_030555

Reference: OH-1004 Chr: Chr06 Coordinates: 118475075-118476442 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1368 bp · LXL04_030555|LXL04_030555|OH1004|cDNA

atGAAGCTCTCAACACATTTACTTGTCTATCCTTTCCCTACCTCCGGCCATATCATCCCCTTACTCGACCTCACCGACCTCCTCCTCCGCCGTGGCCTAACCATCACCGTCATCATCTCCCCCGCCAACCTCCCACTACTCGACCCTCTCCTCTCCTCCCACCCCTCTTCCCTCCACAAGCTTCTCTTCTCCGATCCAGAAATCACCCCATTCCCCGATCCCCTTATCGCCAAAGTACTCTCCACACAAAAACTCTTCGA...

CDS

Download CDS FASTA

1368 bp · LXL04_030555|LXL04_030555|OH1004|CDS

ATGAAGCTCTCAACACATTTACTTGTCTATCCTTTCCCTACCTCCGGCCATATCATCCCCTTACTCGACCTCACCGACCTCCTCCTCCGCCGTGGCCTAACCATCACCGTCATCATCTCCCCCGCCAACCTCCCACTACTCGACCCTCTCCTCTCCTCCCACCCCTCTTCCCTCCACAAGCTTCTCTTCTCCGATCCAGAAATCACCCCATTCCCCGATCCCCTTATCGCCAAAGTACTCTCCACACAAAAACTCTTCGA...

Protein

Download Protein FASTA

455 aa · LXL04_030555|LXL04_030555|OH1004|PROTEIN

MKLSTHLLVYPFPTSGHIIPLLDLTDLLLRRGLTITVIISPANLPLLDPLLSSHPSSLHKLLFSDPEITPFPDPLIAKVLSTQKLFDPIVKWFRSHPSPPVAILSDFFLGWTTELASHLGIRRVVFSTSGVLSFSILQTLWEDVEEINADNGDQRDEKLSISFPEIPNSPEFPRWQLLPVSCNFKKGEPNYESFRNGMLGNMNSWGIVYNTFEDLESVYIDHMKKQMGHDRVWAVGPLLPNEHSLLSTMTRGGSGIVPPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030555`
TK1151 ID	TkA07G410830
OH-1004 ID	LXL04_030555
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.700
Protein coverage (%)	TK1151 99.304 / OH-1004 96.264 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030555

Location Chr06:118475075-118476442 (-)

Description Similar to UGT89B2: UDP-glycosyltransferase 89B2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73880`	Possesses quercetin 3-O-glucosyltransferase, 7-O-glucosyltransferase and 4'-O-glucosyltransferase activities in vitro.	No verified direct reference in this release
`At5g03490`	Glucosyltransferase that glucosylates benzoates and benzoate derivatives in vitro.	No verified direct reference in this release
`At1g06000`	May catalyze rhamnosyl transfer to flavonols.	Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics.2007 · DOI: 10.1074/jbc.m611498200 Regioselective synthesis of flavonoid bisglycosides using Escherichia coli harboring two glycosyltransferases.2013 · DOI: 10.1007/s00253-013-4844-7 Expanded acceptor substrates flexibility study of flavonol 7-O-rhamnosyltransferase, AtUGT89C1 from Arabidopsis thaliana.2015 · DOI: 10.1016/j.carres.2015.09.010 7-Rhamnosylated Flavonols Modulate Homeostasis of the Plant Hormone Auxin and Affect Plant Development.2016 · DOI: 10.1074/jbc.m115.701565 Crystal structures of rhamnosyltransferase UGT89C1 from Arabidopsis thaliana reveal the molecular basis of sugar donor specificity for UDP-β-l-rhamnose and rhamnosylation mechanism.2019 · DOI: 10.1111/tpj.14321
`At2g36780`	UDP-glycosyltransferase 73C3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030555 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0051555 flavonol biosynthetic process Biological Process

GO:1901734 quercetin biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

GO:0033836 flavonol 7-O-beta-glucosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0047893 flavonol 3-O-glucosyltransferase activity Molecular Function

GO:0080043 quercetin 3-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G06000

ath:AT1G73880

ath:AT2G36780

ath:AT5G03490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.801

Rank 1 · LXL04_030555 · OH-1004

Nucleus0.242

Rank 2 · LXL04_030555 · OH-1004

Peroxisome0.061

Rank 3 · LXL04_030555 · OH-1004

Endoplasmic reticulum0.056

Rank 4 · LXL04_030555 · OH-1004

Plastid0.053

Rank 5 · LXL04_030555 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26168.1Glyco_transf_N200-240 aa

PF00201.25UDPGT266-382 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030555	`PF26168.1`	Glyco_transf_N	200	240	1.7e-08	35.4
LXL04_030555	`PF00201.25`	UDPGT	266	382	4.2e-13	49.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C9B0`	Arabidopsis thaliana	Flavonol 3-O-glucosyltransferase UGT89B1	45.322%	Swiss-Prot	moderate database homology
`Q9LZD8`	Arabidopsis thaliana	UDP-glycosyltransferase 89A2	41.164%	Swiss-Prot	moderate database homology
`Q9LNE6`	Arabidopsis thaliana	Flavonol 7-O-rhamnosyltransferase	37.370%	Swiss-Prot	moderate database homology
`Q9ZQ96`	Arabidopsis thaliana	UDP-glycosyltransferase 73C3	31.013%	Swiss-Prot	moderate database homology

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