LXL04_030400 | RubberDandelionOmics

Gene overview

LXL04_030400

Reference: OH-1004 Chr: Chr06 Coordinates: 115393738-115395606 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1191 bp · LXL04_030400|LXL04_030400|OH1004|cDNA

ATGGAGAAGGGATTGAGAAACGCACCACCCAACAATGGAAAACTTATCACTATTCTTAGCATCGATGGAGGTGGTATTAGAGGGATCATTCCAGCCACTATACTTACTTTTCTCGAATCACAACTTCAGGAATTGGATGGAAAAGATGCAAGACTTGCAGATTACTTTGATGTAATGGCGGGAACTAGCACCGGTGGTCTTGTGACAGCCATGTTAACAGCTCCAAACCAAAACAACCGACCCCTCTACGAGGCAAAAGA...

CDS

Download CDS FASTA

1191 bp · LXL04_030400|LXL04_030400|OH1004|CDS

ATGGAGAAGGGATTGAGAAACGCACCACCCAACAATGGAAAACTTATCACTATTCTTAGCATCGATGGAGGTGGTATTAGAGGGATCATTCCAGCCACTATACTTACTTTTCTCGAATCACAACTTCAGGAATTGGATGGAAAAGATGCAAGACTTGCAGATTACTTTGATGTAATGGCGGGAACTAGCACCGGTGGTCTTGTGACAGCCATGTTAACAGCTCCAAACCAAAACAACCGACCCCTCTACGAGGCAAAAGA...

Protein

Download Protein FASTA

396 aa · LXL04_030400|LXL04_030400|OH1004|PROTEIN

MEKGLRNAPPNNGKLITILSIDGGGIRGIIPATILTFLESQLQELDGKDARLADYFDVMAGTSTGGLVTAMLTAPNQNNRPLYEAKDIVPFYKEHGPKIFPQKRGLWGFIVNMVKMLTGPKYNGKYLRNLINEKLGNTHLNETLTGVVIPTFDIQRLQPFIFSTYEADVNPCYNAKLSDICISTSAAPTYFPPYYFKNDNEDGRKGEEFNLVDGGVAANNPALAAISEITNQVFSENPNFFPIKPIDYGRFLLISIGTGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030400`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030400

Location Chr06:115393738-115395606 (+)

Description Similar to PLP1: Patatin-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g37070`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release
`At4g37060`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release
`At4g37050`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release
`At2g26560`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	A pathogen-inducible patatin-like lipid acyl hydrolase facilitates fungal and bacterial host colonization in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02578.x The Arabidopsis patatin-like protein 2 (PLP2) plays an essential role in cell death execution and differentially affects biosynthesis of oxylipins and resistance to pathogens.2009 · DOI: 10.1094/mpmi-22-4-0469

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0477500`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030400 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006629 lipid metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010311 lateral root formation Biological Process

GO:0012501 programmed cell death Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0051607 defense response to virus Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT2G26560

ath:AT4G37050

ath:AT4G37060

ath:AT4G37070

dosa:Os08g0477500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.524

Rank 1 · LXL04_030400 · OH-1004

Nucleus0.151

Rank 2 · LXL04_030400 · OH-1004

Cell membrane0.149

Rank 3 · LXL04_030400 · OH-1004

Endoplasmic reticulum0.098

Rank 4 · LXL04_030400 · OH-1004

Lysosome / Vacuole0.089

Rank 5 · LXL04_030400 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01734.28Patatin19-226 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030400	`PF01734.28`	Patatin	19	226	1.2e-28	101.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23179`	Arabidopsis thaliana	Patatin-like protein 1	57.326%	Swiss-Prot	strong database homology
`O23180`	Arabidopsis thaliana	Patatin-like protein 5	56.812%	Swiss-Prot	strong database homology
`O23181`	Arabidopsis thaliana	Patatin-like protein 3	60.506%	Swiss-Prot	strong database homology
`O48723`	Arabidopsis thaliana	Patatin-like protein 2	59.585%	Swiss-Prot	strong database homology
`Q6ZJD3`	Oryza sativa subsp. japonica	Patatin-like protein 2	57.069%	Swiss-Prot	strong database homology

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