Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1305 bp · LXL04_030390|LXL04_030390|OH1004|cDNA
ATGGGTAAACAACGTCGTAATCAGCGTAAGAATGCTGCACTGCTTGATAGTGATGATACAGATAGTGTAAGTTCTTCATCAACTATCCCTTCAGATCAAATGCTGGGAAATGGTGGGGAAGAAGTCCAAATTGATAAAGAAAGTGTGTTGGATCAAAGTTTAGATGCGTTATATGAAAAAAGGGGATCAACGAGGGAGAATGCATTGGTGACAATCATCGAGACTTTTAATAGCAATTTACCTCATGAATTTGTCGAAAA...
1305 bp · LXL04_030390|LXL04_030390|OH1004|CDS
ATGGGTAAACAACGTCGTAATCAGCGTAAGAATGCTGCACTGCTTGATAGTGATGATACAGATAGTGTAAGTTCTTCATCAACTATCCCTTCAGATCAAATGCTGGGAAATGGTGGGGAAGAAGTCCAAATTGATAAAGAAAGTGTGTTGGATCAAAGTTTAGATGCGTTATATGAAAAAAGGGGATCAACGAGGGAGAATGCATTGGTGACAATCATCGAGACTTTTAATAGCAATTTACCTCATGAATTTGTCGAAAA...
Protein
Download Protein FASTA434 aa · LXL04_030390|LXL04_030390|OH1004|PROTEIN
MGKQRRNQRKNAALLDSDDTDSVSSSSTIPSDQMLGNGGEEVQIDKESVLDQSLDALYEKRGSTRENALVTIIETFNSNLPHEFVEKKFATMLHQCLNSVKKGSAKEVALASHAIGLLALTVGSGKKAQEILEEAVSPISEALKSRSESSKVASLLDCLAVITFVGGNEPEETEKCMQIMWQVVHPKLGLNVIATKPTPQVITSMVSAWSFLLTTTDGWTLDPKTWQGSISYFSTLLEKDDRSVRIAAGEALALIFEIGN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030390 |
|---|---|
| TK1151 ID | TkA07G400940 |
| OH-1004 ID | LXL04_030390 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 59.447Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030390 |
|---|---|
| Location | Chr06:115181391-115184199 (+) |
| Description | Similar to IFRD1: Interferon-related developmental regulator 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0006417 regulation of translation Biological Process GO:0016055 Wnt signaling pathway Biological Process GO:0017148 negative regulation of translation Biological Process GO:0030154 cell differentiation Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific Molecular Function GO:0030371 translation repressor activity Molecular Function GO:0043022 ribosome binding Molecular Function |
| KEGG gene cross-reference | hsa:3475 mmu:15982 mmu:15983 rno:29596 ssc:493185 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05004.20IFRD26-325 aaPF04836.18IFRD_C370-420 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030390 | PF05004.20 | IFRD | 26 | 325 | 3e-90 | 303.0 |
| LXL04_030390 | PF04836.18 | IFRD_C | 370 | 420 | 6.3e-17 | 62.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.