LXL04_030382 | RubberDandelionOmics

Gene overview

LXL04_030382

Reference: OH-1004 Chr: Chr06 Coordinates: 115118472-115121095 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1062 bp · LXL04_030382|LXL04_030382|OH1004|cDNA

ATGGCGGAAGATGAGCAGCGGCTACTCTGTGAGGCGGCGACGAAAGGAGAAGCTCGGAAAGTGCAAACCTTAATCGCTTCCGGAGCCGACGTTTCCTACTTCGACCAAGACGGTTTCACACCTCTGATGCACGCTGCCAAGCACGGACACGCCGATGTGGTAAAATCCCTGCTCGACGCCGGTGCTCCATGGAACGCCCTCTCTCCTTCCAATCTCTCCGCCGGAGACTTCGCCATGGATGCCGGGCACCAAGATGCCTT...

CDS

Download CDS FASTA

1062 bp · LXL04_030382|LXL04_030382|OH1004|CDS

ATGGCGGAAGATGAGCAGCGGCTACTCTGTGAGGCGGCGACGAAAGGAGAAGCTCGGAAAGTGCAAACCTTAATCGCTTCCGGAGCCGACGTTTCCTACTTCGACCAAGACGGTTTCACACCTCTGATGCACGCTGCCAAGCACGGACACGCCGATGTGGTAAAATCCCTGCTCGACGCCGGTGCTCCATGGAACGCCCTCTCTCCTTCCAATCTCTCCGCCGGAGACTTCGCCATGGATGCCGGGCACCAAGATGCCTT...

Protein

Download Protein FASTA

353 aa · LXL04_030382|LXL04_030382|OH1004|PROTEIN

MAEDEQRLLCEAATKGEARKVQTLIASGADVSYFDQDGFTPLMHAAKHGHADVVKSLLDAGAPWNALSPSNLSAGDFAMDAGHQDAFDILLNTGIQAELILGTIARKETKIGDLEGDYLEDRVSFSEDKLMDANSKAVMMAWEKPLMEAHAKAICSRGGHILNVGFGMGLVDTAIQQYSPATHTIIEAHPDVYNRMRLSGWTEKENVKVVFGRWQDVVHQLDTYDGIFFDTYGEYYEDLREFHQHLPALLKPGGIYSFFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030382`
TK1151 ID	TkA07G400600
OH-1004 ID	LXL04_030382
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 97.583 / OH-1004 91.501 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_030382`
Location	Chr06:115118472-115121095 (+)
Description	Similar to rmt2: Protein arginine N-methyltransferase 2 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030382` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0032259 methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0019702 protein arginine N5-methyltransferase activity Molecular Function
KEGG gene cross-reference	afm:AFUA_2G09080 cnb:CNBA4000 spo:2542686 yli:2909738 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.577

Rank 1 · LXL04_030382 · OH-1004

Nucleus0.479

Rank 2 · LXL04_030382 · OH-1004

Mitochondrion0.075

Rank 3 · LXL04_030382 · OH-1004

Cell membrane0.059

Rank 4 · LXL04_030382 · OH-1004

Endoplasmic reticulum0.058

Rank 5 · LXL04_030382 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796.14Ank_29-96 aa

PF13637.13Ank_49-57 aa

PF13857.13Ank_526-78 aa

PF00023.37Ank37-66 aa

PF27704.2GuanidinoAc_N-MeTrfase128-265 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030382	`PF12796.14`	Ank_2	9	96	2e-11	45.0
LXL04_030382	`PF13637.13`	Ank_4	9	57	5.3e-10	40.0
LXL04_030382	`PF13857.13`	Ank_5	26	78	7.8e-10	39.6
LXL04_030382	`PF00023.37`	Ank	37	66	6.3e-10	39.5
LXL04_030382	`PF27704.2`	GuanidinoAc_N-MeTrfase	128	265	2.2e-22	80.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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