LXL04_030366 | RubberDandelionOmics

Gene overview

LXL04_030366

Reference: OH-1004 Chr: Chr06 Coordinates: 114917574-114918298 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

366 bp · LXL04_030366|LXL04_030366|OH1004|cDNA

ATGGTTCATACGGATTTCATAGTAAATATTTCCAAGTTTGAAATTCAGAGGAAATCAGGAAACAAGTCTCGTTTACATAACAAGGAAGACAACAAAGGGGAAAGAAAATCTCAAATCGAAGAAAGAATGGCCGAAAGCAAAGAGATTCCGTCTCAATACGATCTCGACACAAAGTGGGACGCCTATCTCGATTTAGGTGTTCGTCGATTCGTATACTCCTCCGCCACCGGCGCTCTTGCTGGCCTACTCCTCTTCCGTTC...

CDS

Download CDS FASTA

366 bp · LXL04_030366|LXL04_030366|OH1004|CDS

ATGGTTCATACGGATTTCATAGTAAATATTTCCAAGTTTGAAATTCAGAGGAAATCAGGAAACAAGTCTCGTTTACATAACAAGGAAGACAACAAAGGGGAAAGAAAATCTCAAATCGAAGAAAGAATGGCCGAAAGCAAAGAGATTCCGTCTCAATACGATCTCGACACAAAGTGGGACGCCTATCTCGATTTAGGTGTTCGTCGATTCGTATACTCCTCCGCCACCGGCGCTCTTGCTGGCCTACTCCTCTTCCGTTC...

Protein

Download Protein FASTA

121 aa · LXL04_030366|LXL04_030366|OH1004|PROTEIN

MVHTDFIVNISKFEIQRKSGNKSRLHNKEDNKGERKSQIEERMAESKEIPSQYDLDTKWDAYLDLGVRRFVYSSATGALAGLLLFRSPVTRWASIAFGAGVGIGSAYSECSSHKFDEDQLP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030366`
TK1151 ID	TkA07G399830
OH-1004 ID	LXL04_030366
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 95.868 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030366

Location Chr06:114917574-114918298 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22520`	Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030366 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0061617 MICOS complex Cellular Component

GO:0098800 inner mitochondrial membrane protein complex Cellular Component

KEGG gene cross-reference

ath:AT1G22520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.674

Rank 1 · LXL04_030366 · OH-1004

Plastid0.192

Rank 2 · LXL04_030366 · OH-1004

Cytoplasm0.115

Rank 3 · LXL04_030366 · OH-1004

Nucleus0.058

Rank 4 · LXL04_030366 · OH-1004

Peroxisome0.040

Rank 5 · LXL04_030366 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04418.18DUF54344-112 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030366	`PF04418.18`	DUF543	44	112	1.5e-20	73.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LAJ9`	Arabidopsis thaliana	MICOS complex subunit MIC10	69.565%	Swiss-Prot	moderate database homology

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