LXL04_030348 | RubberDandelionOmics

Gene overview

LXL04_030348

Reference: OH-1004 Chr: Chr06 Coordinates: 114732951-114735461 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1449 bp · LXL04_030348|LXL04_030348|OH1004|cDNA

ATGGAGGAGAGAGAAGATCTCATATTCTTGCATGTCTTCCTCTTCCTCATTGCACTTATCTCCTACATTCTCATAAGAAGAAACCAAAAGAACGCCGCTAAGCTCCCTCCCGGTTCACTAGGGTGGCCGTACATTGGTGAAACACTTCAGCTCTACTCTCAAGATCCCAACGTGTTCTTCGCATCCAAACAGAAAAGGTATGGTGAGATTTTCAAAACCCACATTTTGGGGTGTCCAAGTATCATGTTGGCTAGCCCTGA...

CDS

Download CDS FASTA

1449 bp · LXL04_030348|LXL04_030348|OH1004|CDS

ATGGAGGAGAGAGAAGATCTCATATTCTTGCATGTCTTCCTCTTCCTCATTGCACTTATCTCCTACATTCTCATAAGAAGAAACCAAAAGAACGCCGCTAAGCTCCCTCCCGGTTCACTAGGGTGGCCGTACATTGGTGAAACACTTCAGCTCTACTCTCAAGATCCCAACGTGTTCTTCGCATCCAAACAGAAAAGGTATGGTGAGATTTTCAAAACCCACATTTTGGGGTGTCCAAGTATCATGTTGGCTAGCCCTGA...

Protein

Download Protein FASTA

482 aa · LXL04_030348|LXL04_030348|OH1004|PROTEIN

MEEREDLIFLHVFLFLIALISYILIRRNQKNAAKLPPGSLGWPYIGETLQLYSQDPNVFFASKQKRYGEIFKTHILGCPSIMLASPEAARFVLVTQAHLFKPTYPKSKENLIGPLALFFHQGDYHTRLRKLVQGSFSLDNLRRLVPDIETMVVSALELWTDGNVINTFYEMKKLSFEVGILAIFGHLDASQKEELKQNYRILDKGYNSFPTKLPGTPFKKAFLARKRLQEILSEIISERKEKRTAEKNLLGCLLNSKDDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030348`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030348

Location Chr06:114732951-114735461 (-)

Description Similar to CYP707A1: Abscisic acid 8'-hydroxylase CYP707A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19270`	Participates in ABA oxidative degradation but does not catalyze the isomerization of 8′-hydroxy-ABA to (−)-phaseic acid.	The Arabidopsis cytochrome P450 CYP707A encodes ABA 8'-hydroxylases: key enzymes in ABA catabolism.2004 · DOI: 10.1038/sj.emboj.7600121 CYP707A1 and CYP707A2, which encode abscisic acid 8'-hydroxylases, are indispensable for proper control of seed dormancy and germination in Arabidopsis.2006 · DOI: 10.1104/pp.106.079475

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0457100`	Involved in the oxidative degradation of abscisic acid.	No verified direct reference in this release
`UniProt: A2Z212`	Involved in the oxidative degradation of abscisic acid.	No verified direct reference in this release
`UniProt: Q09J78`	Involved in the oxidative degradation of abscisic acid.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030348 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009856 pollination Biological Process

GO:0016125 sterol metabolic process Biological Process

GO:0046345 abscisic acid catabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0016020 membrane Cellular Component

GO:0005506 iron ion binding Molecular Function

GO:0010295 (+)-abscisic acid 8'-hydroxylase activity Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ath:AT3G19270

dosa:Os09g0457100

sly:100136887

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.861

Rank 1 · LXL04_030348 · OH-1004

Golgi apparatus0.085

Rank 2 · LXL04_030348 · OH-1004

Cytoplasm0.055

Rank 3 · LXL04_030348 · OH-1004

Nucleus0.040

Rank 4 · LXL04_030348 · OH-1004

Cell membrane0.035

Rank 5 · LXL04_030348 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45036-442 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030348	`PF00067.28`	p450	36	442	1.7e-72	245.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LJK2`	Arabidopsis thaliana	Abscisic acid 8'-hydroxylase 4	68.860%	Swiss-Prot	strong database homology
`Q0J185`	Oryza sativa subsp. japonica	Abscisic acid 8'-hydroxylase 3	65.560%	Swiss-Prot	strong database homology
`A2Z212`	Oryza sativa subsp. indica	Abscisic acid 8'-hydroxylase 3	65.289%	Swiss-Prot	strong database homology
`Q09J78`	Oryza sativa subsp. indica	Abscisic acid 8'-hydroxylase 2	65.033%	Swiss-Prot	strong database homology

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