LXL04_030288 | RubberDandelionOmics

Gene overview

LXL04_030288

Reference: OH-1004 Chr: Chr06 Coordinates: 113575446-113577995 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1200 bp · LXL04_030288|LXL04_030288|OH1004|cDNA

ATGGCAAATGCATCCTGGGTTTTCACTCCTACACTTCCTCATCTTAATCGAAAGAGGATTTCCTCATCCGTAGCCATTTTTCGATCTGGATTGTATTCCCCTGATGCAATCTCTAAAAGGATATCATGCGCCAGTACCGCTCGAGGTGCCGATAAGCTCTCTAGTAATGAATCTCGTCCCGCTAGGCTAGTTGGCAAGGGTTGCAAGTTAGTTGGATGTGGTTCAGCTGTACCTACTCTTCAAATTTCAAACGACGATCT...

CDS

Download CDS FASTA

1200 bp · LXL04_030288|LXL04_030288|OH1004|CDS

ATGGCAAATGCATCCTGGGTTTTCACTCCTACACTTCCTCATCTTAATCGAAAGAGGATTTCCTCATCCGTAGCCATTTTTCGATCTGGATTGTATTCCCCTGATGCAATCTCTAAAAGGATATCATGCGCCAGTACCGCTCGAGGTGCCGATAAGCTCTCTAGTAATGAATCTCGTCCCGCTAGGCTAGTTGGCAAGGGTTGCAAGTTAGTTGGATGTGGTTCAGCTGTACCTACTCTTCAAATTTCAAACGACGATCT...

Protein

Download Protein FASTA

399 aa · LXL04_030288|LXL04_030288|OH1004|PROTEIN

MANASWVFTPTLPHLNRKRISSSVAIFRSGLYSPDAISKRISCASTARGADKLSSNESRPARLVGKGCKLVGCGSAVPTLQISNDDLSKIVDTNDEWISVRTGIRNRRVLSGKDRMTDLATEAAKKALEMANVHPDDVDLVLLCTSTADDLFGSAPQIQAALGCKGNPLAFDITAACSGFLLGLISASCYIRGGGFKNVLVIGADALSRFVDWTDRGTCILFGDAAGAVLIQACESEEDGIFGFDVHSDGEGNRHLNAGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030288`
TK1151 ID	TkA07G394770
OH-1004 ID	LXL04_030288
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030288

Location Chr06:113575446-113577995 (+)

Description Similar to KAS3B: 3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62640`	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030288 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0030497 fatty acid elongation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity Molecular Function

GO:0033818 beta-ketoacyl-acyl-carrier-protein synthase III activity Molecular Function

KEGG gene cross-reference

ath:AT1G62640

mar:MAE_19470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.962

Rank 1 · LXL04_030288 · OH-1004

Mitochondrion0.064

Rank 2 · LXL04_030288 · OH-1004

Cytoplasm0.039

Rank 3 · LXL04_030288 · OH-1004

Peroxisome0.033

Rank 4 · LXL04_030288 · OH-1004

Nucleus0.022

Rank 5 · LXL04_030288 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08545.17ACP_syn_III171-250 aa

PF08541.17ACP_syn_III_C309-398 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030288	`PF08545.17`	ACP_syn_III	171	250	2.5e-31	108.1
LXL04_030288	`PF08541.17`	ACP_syn_III_C	309	398	1.3e-38	131.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P49243`	Arabidopsis thaliana	Beta-ketoacyl-[acyl-carrier-protein] synthase III, chloroplastic	71.852%	Swiss-Prot	strong database homology

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