LXL04_030281 | RubberDandelionOmics

Gene overview

LXL04_030281

Reference: OH-1004 Chr: Chr06 Coordinates: 113408071-113410180 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1468 bp · LXL04_030281|LXL04_030281|OH1004|cDNA

TTTCTAAAAGATGGGTGCTGACAACACTGCCGGAAAACCCCAACAAGGTTTCGAGCTCGCCGGAGATTTCGCTCCTCAGGGCCCGTCGAAGTGCTTCGATGACGACGGACGTCTTAAAAGATCTGGAACTGTTTGGAGTGCAAGTGCACATATCATAACTGCGGTTATAGGCTCCGGGGTGCTATCACTGGCATGGGCCACCGCGCAGCTCGGCTGGATCGCCGGCCCCACCGTTCTTTTCCTTTTCTCATTTGTGACTT...

CDS

Download CDS FASTA

1458 bp · LXL04_030281|LXL04_030281|OH1004|CDS

ATGGGTGCTGACAACACTGCCGGAAAACCCCAACAAGGTTTCGAGCTCGCCGGAGATTTCGCTCCTCAGGGCCCGTCGAAGTGCTTCGATGACGACGGACGTCTTAAAAGATCTGGAACTGTTTGGAGTGCAAGTGCACATATCATAACTGCGGTTATAGGCTCCGGGGTGCTATCACTGGCATGGGCCACCGCGCAGCTCGGCTGGATCGCCGGCCCCACCGTTCTTTTCCTTTTCTCATTTGTGACTTACTACACCTC...

Protein

Download Protein FASTA

485 aa · LXL04_030281|LXL04_030281|OH1004|PROTEIN

MGADNTAGKPQQGFELAGDFAPQGPSKCFDDDGRLKRSGTVWSASAHIITAVIGSGVLSLAWATAQLGWIAGPTVLFLFSFVTYYTSCLLAACYRSGDPVTGKRNYTYMEAVQSNLGGFQVKICGFIQYFNLVGVAIGYTIAASISAIAVKRSTCFHEKGHESPCHVSGTPYMVMFGVVEIFLSQIPDFDQISWLSMVAAVMSFTYSSIGLGLGISKVAENGKIKGSLTGIKIGTVTQTEKIWQSFQALGAIAFAYSYSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030281`
TK1151 ID	TkA07G393500
OH-1004 ID	LXL04_030281
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 30.415 / OH-1004 13.608 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030281

Location Chr06:113408071-113410180 (+)

Description Similar to AAP2: Amino acid permease 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g09220`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315 Differential expression of two related amino acid transporters with differing substrate specificity in Arabidopsis thaliana.1993 · DOI: 10.1046/j.1365-313x.1993.04060993.x
`At5g63850`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
`At1g77380`	Amino acid-proton symporter.	Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
`At1g44100`	Amino acid-proton symporter.	Root uptake of cationic amino acids by Arabidopsis depends on functional expression of amino acid permease 5.2008 · DOI: 10.1111/j.1469-8137.2008.02589.x Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
`At1g58360`	Amino acid-proton symporter.	AAP1 transports uncharged amino acids into roots of Arabidopsis.2007 · DOI: 10.1111/j.1365-313x.2007.03045.x AAP1 regulates import of amino acids into developing Arabidopsis embryos.2009 · DOI: 10.1111/j.1365-313x.2009.03890.x Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315 Differential expression of two related amino acid transporters with differing substrate specificity in Arabidopsis thaliana.1993 · DOI: 10.1046/j.1365-313x.1993.04060993.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030281 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0006865 amino acid transport Biological Process

GO:0006952 defense response Biological Process

GO:0009624 response to nematode Biological Process

GO:0015800 acidic amino acid transport Biological Process

GO:0015802 basic amino acid transport Biological Process

GO:0015804 neutral amino acid transport Biological Process

GO:0015808 L-alanine transport Biological Process

GO:0043090 amino acid import Biological Process

GO:0098712 L-glutamate import across plasma membrane Biological Process

GO:0110126 phloem loading Biological Process

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G44100

ath:AT1G58360

ath:AT1G77380

ath:AT5G09220

ath:AT5G63850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.730

Rank 1 · LXL04_030281 · OH-1004

Lysosome / Vacuole0.117

Rank 2 · LXL04_030281 · OH-1004

Cytoplasm0.101

Rank 3 · LXL04_030281 · OH-1004

Endoplasmic reticulum0.083

Rank 4 · LXL04_030281 · OH-1004

Golgi apparatus0.048

Rank 5 · LXL04_030281 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490.25Aa_trans38-472 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030281	`PF01490.25`	Aa_trans	38	472	7.7e-120	401.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38967`	Arabidopsis thaliana	Amino acid permease 2	71.279%	Swiss-Prot	strong database homology
`Q9FN04`	Arabidopsis thaliana	Amino acid permease 4	72.043%	Swiss-Prot	strong database homology
`Q39134`	Arabidopsis thaliana	Amino acid permease 3	71.064%	Swiss-Prot	strong database homology
`Q8GUM3`	Arabidopsis thaliana	Amino acid permease 5	67.653%	Swiss-Prot	strong database homology
`Q42400`	Arabidopsis thaliana	Amino acid permease 1	56.584%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card