LXL04_030246 | RubberDandelionOmics

Gene overview

LXL04_030246

Reference: OH-1004 Chr: Chr06 Coordinates: 112306301-112314545 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2442 bp · LXL04_030246|LXL04_030246|OH1004|cDNA

atGACTCCTAGCTCAGCTGTGAAGAGGCACCGGGTTATAGTCCTCACGGGGGCGAAGGTTAGGAGTTCGACTCCTGGCTGGAGCACTCTTGGAGGATTTTTCCCTGGACGGCAGACCAAGTTCGAGGCCCATTATATGCCTGAAGTATCATTCATAAGGAAAACTGAGTGCAAAAAGGTGGGGGTAGGTTTTCTCTTCGGAGTAGACTCGAAGTCGGGGCGTGCCTGCTGGATGCGACGGTGGCACGATGATACGCCGTT...

CDS

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2442 bp · LXL04_030246|LXL04_030246|OH1004|CDS

ATGACTCCTAGCTCAGCTGTGAAGAGGCACCGGGTTATAGTCCTCACGGGGGCGAAGGTTAGGAGTTCGACTCCTGGCTGGAGCACTCTTGGAGGATTTTTCCCTGGACGGCAGACCAAGTTCGAGGCCCATTATATGCCTGAAGTATCATTCATAAGGAAAACTGAGTGCAAAAAGGTGGGGGTAGGTTTTCTCTTCGGAGTAGACTCGAAGTCGGGGCGTGCCTGCTGGATGCGACGGTGGCACGATGATACGCCGTT...

Protein

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813 aa · LXL04_030246|LXL04_030246|OH1004|PROTEIN

MTPSSAVKRHRVIVLTGAKVRSSTPGWSTLGGFFPGRQTKFEAHYMPEVSFIRKTECKKVGVGFLFGVDSKSGRACWMRRWHDDTPLHHICHAQKSFGNFKSMIRALDEIKAIGKISGPTAMTGLLLYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQMKLLGITLQRTVLLLLSTSIPISFMWFNMKTILLWCGQDEEISSAAHTFIIFAIPDLFLLSLLHPLRVYLRAQNIIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030246`
TK1151 ID	TkA04G114800
OH-1004 ID	LXL04_030246
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	92.600
Protein coverage (%)	TK1151 79.167 / OH-1004 11.685 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030246

Location Chr06:112306301-112314545 (-)

Description Similar to DTX48: Protein DETOXIFICATION 48

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g58340`	Functions as a multidrug and toxin extrusion transporter.	A Golgi-localized MATE transporter mediates iron homoeostasis under osmotic stress in Arabidopsis.2012 · DOI: 10.1042/bj20111311 A subgroup of MATE transporter genes regulates hypocotyl cell elongation in Arabidopsis.2015 · DOI: 10.1093/jxb/erv344
`At4g29140`	Functions as a multidrug and toxin extrusion transporter that negatively regulates plant disease resistance.	ADP1 affects plant architecture by regulating local auxin biosynthesis.2014 · DOI: 10.1371/journal.pgen.1003954 A subgroup of MATE transporter genes regulates hypocotyl cell elongation in Arabidopsis.2015 · DOI: 10.1093/jxb/erv344
`At4g23030`	Protein DETOXIFICATION 49.	No verified direct reference in this release
`At5g19700`	May act as a negative regulator of hypocotyl cell elongation in the light.	A subgroup of MATE transporter genes regulates hypocotyl cell elongation in Arabidopsis.2015 · DOI: 10.1093/jxb/erv344
`At5g52050`	Functions as a multidrug and toxin extrusion transporter in the export of abscisic acid (ABA) in guard cells.	A DTX/MATE-type transporter facilitates abscisic acid efflux and modulates ABA sensitivity and drought tolerance in Arabidopsis.2014 · DOI: 10.1093/mp/ssu063 A subgroup of MATE transporter genes regulates hypocotyl cell elongation in Arabidopsis.2015 · DOI: 10.1093/jxb/erv344

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030246 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006826 iron ion transport Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009624 response to nematode Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010015 root morphogenesis Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010600 regulation of auxin biosynthetic process Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0046620 regulation of organ growth Biological Process

KEGG gene cross-reference

ath:AT1G58340

ath:AT4G23030

ath:AT4G29140

ath:AT5G19700

ath:AT5G52050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.270

Rank 1 · LXL04_030246 · OH-1004

Endoplasmic reticulum0.161

Rank 2 · LXL04_030246 · OH-1004

Golgi apparatus0.148

Rank 3 · LXL04_030246 · OH-1004

Lysosome / Vacuole0.133

Rank 4 · LXL04_030246 · OH-1004

Plastid0.090

Rank 5 · LXL04_030246 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01554.24MatE119-279 aa

PF01554.24MatE340-503 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030246	`PF01554.24`	MatE	119	279	3.7e-70	235.5
LXL04_030246	`PF01554.24`	MatE	340	503	3.7e-70	235.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SLV0`	Arabidopsis thaliana	Protein DETOXIFICATION 48	73.482%	Swiss-Prot	moderate database homology
`Q9SZE2`	Arabidopsis thaliana	Protein DETOXIFICATION 51	53.593%	Swiss-Prot	moderate database homology
`O82752`	Arabidopsis thaliana	Protein DETOXIFICATION 49	62.092%	Swiss-Prot	moderate database homology
`Q4PSF4`	Arabidopsis thaliana	Protein DETOXIFICATION 52	55.211%	Swiss-Prot	moderate database homology
`Q9FJ87`	Arabidopsis thaliana	Protein DETOXIFICATION 50	53.564%	Swiss-Prot	moderate database homology

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