LXL04_030210 | RubberDandelionOmics

Gene overview

LXL04_030210

Reference: OH-1004 Chr: Chr06 Coordinates: 110867992-110873647 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2294 bp · LXL04_030210|LXL04_030210|OH1004|cDNA

GAAAGGAAAGCCCCCATTATTCTCTAACTATGGGAAGTGTAGCGGCGGAGCATGCGCCGGCGACAAACGGCAAGAAACCATCGGAGGAAGAAGACGAAGAATCTCCGATCGAAGAGGTCCGGTTAACCGTTCCGACCACCGATGACCCGACTCAATATCTATGGACGTTCCGAATGTGGGTGTTGGGTCTAATCTCATGCGTTCTACTCTCGTTTCTGAACCAGTTCTTTTCGTACCGGACATCGCCATTGATAATAACT...

CDS

Download CDS FASTA

2265 bp · LXL04_030210|LXL04_030210|OH1004|CDS

ATGGGAAGTGTAGCGGCGGAGCATGCGCCGGCGACAAACGGCAAGAAACCATCGGAGGAAGAAGACGAAGAATCTCCGATCGAAGAGGTCCGGTTAACCGTTCCGACCACCGATGACCCGACTCAATATCTATGGACGTTCCGAATGTGGGTGTTGGGTCTAATCTCATGCGTTCTACTCTCGTTTCTGAACCAGTTCTTTTCGTACCGGACATCGCCATTGATAATAACTCAGATCACCGTTCAGGTGGCGACGCTTCC...

Protein

Download Protein FASTA

754 aa · LXL04_030210|LXL04_030210|OH1004|PROTEIN

MGSVAAEHAPATNGKKPSEEEDEESPIEEVRLTVPTTDDPTQYLWTFRMWVLGLISCVLLSFLNQFFSYRTSPLIITQITVQVATLPIGRFMAAVLPTTKFSVKLPGCKSREFSLNPGPFNMKEHVLITIFANAGSAFGNGSAYAVGIVNIIKVFYFRNISFIAAWLLIITTQVLGYGWAGLLRKYVVEPSHMWWPSTLVQISLFRALHAKEDDEDEDPNSDNIKRMSRSKFFVIVLACSFGYYLFPGYLFQTLQSISWV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030210`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030210

Location Chr06:110867992-110873647 (-)

Description Similar to OPT4: Oligopeptide transporter 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64410`	Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	No verified direct reference in this release
`At1g09930`	Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	No verified direct reference in this release
`At4g10770`	Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	AtOPT6 transports glutathione derivatives and is induced by primisulfuron.2004 · DOI: 10.1104/pp.104.039859
`At4g27730`	Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	AtOPT6 transports glutathione derivatives and is induced by primisulfuron.2004 · DOI: 10.1104/pp.104.039859
`At4g16370`	May be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	AtOPT3, a member of the oligopeptide transporter family, is essential for embryo development in Arabidopsis.2002 · DOI: 10.1105/tpc.005629 Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis.2003 · DOI: 10.1074/jbc.m309338200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030210 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0030003 intracellular monoatomic cation homeostasis Biological Process

GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process

GO:1990388 xylem-to-phloem iron transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

GO:0035673 oligopeptide transmembrane transporter activity Molecular Function

GO:0046915 transition metal ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G09930

ath:AT4G10770

ath:AT4G16370

ath:AT4G27730

ath:AT5G64410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.327

Rank 1 · LXL04_030210 · OH-1004

Lysosome / Vacuole0.261

Rank 2 · LXL04_030210 · OH-1004

Endoplasmic reticulum0.223

Rank 3 · LXL04_030210 · OH-1004

Golgi apparatus0.072

Rank 4 · LXL04_030210 · OH-1004

Cytoplasm0.069

Rank 5 · LXL04_030210 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03169.21OPT45-715 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030210	`PF03169.21`	OPT	45	715	1.8e-179	599.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FME8`	Arabidopsis thaliana	Oligopeptide transporter 4	73.469%	Swiss-Prot	strong database homology
`O04514`	Arabidopsis thaliana	Oligopeptide transporter 2	66.489%	Swiss-Prot	strong database homology
`O82485`	Arabidopsis thaliana	Oligopeptide transporter 7	57.182%	Swiss-Prot	strong database homology
`Q9T095`	Arabidopsis thaliana	Oligopeptide transporter 6	53.491%	Swiss-Prot	strong database homology
`O23482`	Arabidopsis thaliana	Oligopeptide transporter 3	53.117%	Swiss-Prot	strong database homology

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