LXL04_030200 | RubberDandelionOmics

Gene overview

LXL04_030200

Reference: OH-1004 Chr: Chr06 Coordinates: 110632237-110638350 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1554 bp · LXL04_030200|LXL04_030200|OH1004|cDNA

ATGACTACAAGGaCTGTCAAATGGTTCAACGGAGTGATCATGAATCCGTGCCTCCGTTTACAACCATGCGAACGCTCCGAGTTCGAGTCTACTCCGAAGAGAAAACTCACCCCCACTTTCATGCACCCAGTTTCCCTAGCAAATTCATGCTTACGGGGCTTCACGCACTATATGGGTCTCGAACTCTGGTCGCCAGTCGGGAGAAAATCCCCCACGAGTGCTCCTGTCAGGAGTCGAACTCCTGACCTTCATCCACATGA...

CDS

Download CDS FASTA

1554 bp · LXL04_030200|LXL04_030200|OH1004|CDS

ATGACTACAAGGACTGTCAAATGGTTCAACGGAGTGATCATGAATCCGTGCCTCCGTTTACAACCATGCGAACGCTCCGAGTTCGAGTCTACTCCGAAGAGAAAACTCACCCCCACTTTCATGCACCCAGTTTCCCTAGCAAATTCATGCTTACGGGGCTTCACGCACTATATGGGTCTCGAACTCTGGTCGCCAGTCGGGAGAAAATCCCCCACGAGTGCTCCTGTCAGGAGTCGAACTCCTGACCTTCATCCACATGA...

Protein

Download Protein FASTA

517 aa · LXL04_030200|LXL04_030200|OH1004|PROTEIN

MTTRTVKWFNGVIMNPCLRLQPCERSEFESTPKRKLTPTFMHPVSLANSCLRGFTHYMGLELWSPVGRKSPTSAPVRSRTPDLHPHETYKPDASSQLSWGTATMEAKLYNIRLSTVVPGRVTVANTIRRFTNADLAMKHHYIKGVYFFKKEAAEGLIVFELKTAMGNLLSLYCTVAGRIRRRLEDNRPFIKCNDSGIRVVEAESNTTVDEWVEMKCDVRELAYSGHVLGPDLEFSPLVSIQFTRFKCGGISVGLSWSHIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030200`
TK1151 ID	TkA07G386620
OH-1004 ID	LXL04_030200
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 80.077 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030200

Location Chr06:110632237-110638350 (-)

Description Similar to CER2: Protein ECERIFERUM 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24510`	Involved in biosynthesis of the epicuticular wax.	Composition of alkyl esters in the cuticular wax on inflorescence stems of Arabidopsis thaliana cer mutants.2007 · DOI: 10.1111/j.1365-313x.2007.03054.x Arabidopsis ECERIFERUM2 is a component of the fatty acid elongation machinery required for fatty acid extension to exceptional lengths.2012 · DOI: 10.1104/pp.112.201640 The Arabidopsis cer26 mutant, like the cer2 mutant, is specifically affected in the very long chain fatty acid elongation process.2013 · DOI: 10.1111/tpj.12060
`At3g23840`	Involved in biosynthesis of the epicuticular wax.	No verified direct reference in this release
`At4g13840`	Involved in biosynthesis of the epicuticular wax.	The Arabidopsis cer26 mutant, like the cer2 mutant, is specifically affected in the very long chain fatty acid elongation process.2013 · DOI: 10.1111/tpj.12060

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030200 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009820 alkaloid metabolic process Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

KEGG gene cross-reference

ath:AT3G23840

ath:AT4G13840

ath:AT4G24510

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.483

Rank 1 · LXL04_030200 · OH-1004

Nucleus0.386

Rank 2 · LXL04_030200 · OH-1004

Cell membrane0.159

Rank 3 · LXL04_030200 · OH-1004

Endoplasmic reticulum0.088

Rank 4 · LXL04_030200 · OH-1004

Plastid0.048

Rank 5 · LXL04_030200 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02458.21Transferase115-369 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030200	`PF02458.21`	Transferase	115	369	9.9e-34	117.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39048`	Arabidopsis thaliana	Protein ECERIFERUM 2	37.500%	Swiss-Prot	moderate database homology
`Q9LIS1`	Arabidopsis thaliana	Protein ECERIFERUM 26-like	34.889%	Swiss-Prot	moderate database homology
`Q9SVM9`	Arabidopsis thaliana	Protein ECERIFERUM 26	36.277%	Swiss-Prot	moderate database homology

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