Gene Card
Gene overview
cDNA / CDS / Protein Sequences
441 bp · LXL04_030177|LXL04_030177|OH1004|cDNA
ATGGCGACAGAAGGAGCTTCGGAGCAATCATTATGGCAAGGATTCAAAGATTTCTGGAGCGATAGATTCAGGATTTTGGATGGTTATCGCCCTTACGTCCGCCGTCAAACCCCTCTTCCGTCATGGTCCGCCTCCGATGTCGAGGAATTCATCGCTTCCGATCCTGTCCATGGCCCCGTCCTGAAGACAACCCGTAATGCTGTGAAATTTCTGGCTGTTGGAGGCATTCTTGGAGCTGTGTCAACTGGCGGTTTTGCATG...
441 bp · LXL04_030177|LXL04_030177|OH1004|CDS
ATGGCGACAGAAGGAGCTTCGGAGCAATCATTATGGCAAGGATTCAAAGATTTCTGGAGCGATAGATTCAGGATTTTGGATGGTTATCGCCCTTACGTCCGCCGTCAAACCCCTCTTCCGTCATGGTCCGCCTCCGATGTCGAGGAATTCATCGCTTCCGATCCTGTCCATGGCCCCGTCCTGAAGACAACCCGTAATGCTGTGAAATTTCTGGCTGTTGGAGGCATTCTTGGAGCTGTGTCAACTGGCGGTTTTGCATG...
Protein
Download Protein FASTA146 aa · LXL04_030177|LXL04_030177|OH1004|PROTEIN
MATEGASEQSLWQGFKDFWSDRFRILDGYRPYVRRQTPLPSWSASDVEEFIASDPVHGPVLKTTRNAVKFLAVGGILGAVSTGGFAWKYSKSPHGAALSLAAGAVFGMSFGQEIANHSLQLYRLDTMAAQVKFMEWWQKKAGRSSY
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030177 |
|---|---|
| TK1151 ID | TkA07G384320 |
| OH-1004 ID | LXL04_030177 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030177 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:110125960-110127050 (+) | ||||||||||||
| Description | Similar to SDH6: Succinate dehydrogenase subunit 6, mitochondrial | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006099 tricarboxylic acid cycle Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005743 mitochondrial inner membrane Cellular Component GO:0019867 outer membrane Cellular Component GO:0045273 respiratory chain complex II (succinate dehydrogenase) Cellular Component GO:0043495 protein-membrane adaptor activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G08480 dosa:Os08g0112800 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF29034.1SDH69-140 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030177 | PF29034.1 | SDH6 | 9 | 140 | 8.3e-70 | 234.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.