LXL04_030152 | RubberDandelionOmics

Gene overview

LXL04_030152

Reference: OH-1004 Chr: Chr06 Coordinates: 109545485-109546537 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1053 bp · LXL04_030152|LXL04_030152|OH1004|cDNA

ATGGGACAATCGAAGAATCTAAAACATCTCCAGTCCATTTGCAAAGACAAAGCAAAAATCATCAAAGCAGCGTTCTCAATCACCAATCGTACCACCACCTCCATCCAAATCACGGTCCTCCGAGCTACCACTCGCTCCGCCCAATCGCCGCCACACGACCACCACATCTCCACCCTCCTCTCCCTCAGCAACACCACACGCCACTCTACCTCAGCATGTATATCCGCCATCATCCACcgcctccaccaccaccaccaccc...

CDS

Download CDS FASTA

1053 bp · LXL04_030152|LXL04_030152|OH1004|CDS

ATGGGACAATCGAAGAATCTAAAACATCTCCAGTCCATTTGCAAAGACAAAGCAAAAATCATCAAAGCAGCGTTCTCAATCACCAATCGTACCACCACCTCCATCCAAATCACGGTCCTCCGAGCTACCACTCGCTCCGCCCAATCGCCGCCACACGACCACCACATCTCCACCCTCCTCTCCCTCAGCAACACCACACGCCACTCTACCTCAGCATGTATATCCGCCATCATCCACCGCCTCCACCACCACCACCACCC...

Protein

Download Protein FASTA

350 aa · LXL04_030152|LXL04_030152|OH1004|PROTEIN

MGQSKNLKHLQSICKDKAKIIKAAFSITNRTTTSIQITVLRATTRSAQSPPHDHHISTLLSLSNTTRHSTSACISAIIHRLHHHHHPNVYVALKSLLTLHYMIAQGSFSLKEQPLLHPMSATGFEFLNLSRFVDNTDIQSREFGGWAQWYAGFLESNLSTSTILGCFLSSSKMDIEKKKEKLKISLYMDLFKELEALVSMIEEICKAPSSLYCQTNDIIYEVMRLVGEDYRMIQYHTKIRLTELSERLHNLTKNELTGLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030152`
TK1151 ID	TkA07G382660
OH-1004 ID	LXL04_030152
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030152

Location Chr06:109545485-109546537 (+)

Description Similar to At4g40080: Putative clathrin assembly protein At4g40080

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g40080`	Putative clathrin assembly protein At4g40080.	No verified direct reference in this release
`At5g10410`	Putative clathrin assembly protein At5g10410.	No verified direct reference in this release
`At5g65370`	Putative clathrin assembly protein At5g65370.	No verified direct reference in this release
`At5g35200`	Putative clathrin assembly protein At5g35200.	No verified direct reference in this release
`At4g02650`	Putative clathrin assembly protein At4g02650.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030152 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006900 vesicle budding from membrane Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0048268 clathrin coat assembly Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:0072659 protein localization to plasma membrane Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005905 clathrin-coated pit Cellular Component

GO:0030136 clathrin-coated vesicle Cellular Component

GO:0090404 pollen tube tip Cellular Component

GO:0090406 pollen tube Cellular Component

KEGG gene cross-reference

ath:AT4G02650

ath:AT4G40080

ath:AT5G10410

ath:AT5G35200

ath:AT5G65370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.547

Rank 1 · LXL04_030152 · OH-1004

Nucleus0.417

Rank 2 · LXL04_030152 · OH-1004

Cell membrane0.121

Rank 3 · LXL04_030152 · OH-1004

Endoplasmic reticulum0.055

Rank 4 · LXL04_030152 · OH-1004

Mitochondrion0.033

Rank 5 · LXL04_030152 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01417.27ENTH33-109 aa

PF07651.23ANTH35-279 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030152	`PF01417.27`	ENTH	33	109	1.6e-06	28.8
LXL04_030152	`PF07651.23`	ANTH	35	279	1.7e-19	70.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L936`	Arabidopsis thaliana	Putative clathrin assembly protein At4g40080	36.774%	Swiss-Prot	moderate database homology
`Q8H0W9`	Arabidopsis thaliana	Putative clathrin assembly protein At5g10410	31.169%	Swiss-Prot	moderate database homology
`Q9FKQ2`	Arabidopsis thaliana	Putative clathrin assembly protein At5g65370	29.000%	Swiss-Prot	weak database homology
`Q9LHS0`	Arabidopsis thaliana	Putative clathrin assembly protein At5g35200	23.592%	Swiss-Prot	weak database homology
`Q8GX47`	Arabidopsis thaliana	Putative clathrin assembly protein At4g02650	27.673%	Swiss-Prot	weak database homology

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