LXL04_030100 | RubberDandelionOmics

Gene overview

LXL04_030100

Reference: OH-1004 Chr: Chr06 Coordinates: 108190038-108191659 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

849 bp · LXL04_030100|LXL04_030100|OH1004|cDNA

ATGGAGAGGAGCACGCCGGTCAGGAAACCTCACACTTCGACGGCAGATCTGTTGACTTGGTCGGAAGTTCCTCCAGCTGATTCACCGGTTACCGGCTCTGCCGCTCGATCCTCCGCCCGTTCTCACCAGCCGTCGGATGGGATCAGTAAGGTTGTGTTTGGAGGTCAGGTTACCGATGAAGAAGTTGAGAGCTTGAACAAAAGGAAACCAGTTTCAGGCTACAAGTTAAAAGAAATCACCGGAAGTGGTATATTTGCAGG...

CDS

Download CDS FASTA

849 bp · LXL04_030100|LXL04_030100|OH1004|CDS

ATGGAGAGGAGCACGCCGGTCAGGAAACCTCACACTTCGACGGCAGATCTGTTGACTTGGTCGGAAGTTCCTCCAGCTGATTCACCGGTTACCGGCTCTGCCGCTCGATCCTCCGCCCGTTCTCACCAGCCGTCGGATGGGATCAGTAAGGTTGTGTTTGGAGGTCAGGTTACCGATGAAGAAGTTGAGAGCTTGAACAAAAGGAAACCAGTTTCAGGCTACAAGTTAAAAGAAATCACCGGAAGTGGTATATTTGCAGG...

Protein

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282 aa · LXL04_030100|LXL04_030100|OH1004|PROTEIN

MERSTPVRKPHTSTADLLTWSEVPPADSPVTGSAARSSARSHQPSDGISKVVFGGQVTDEEVESLNKRKPVSGYKLKEITGSGIFAGENGVEETDAATHTPSNPTSVRMYQQAVTGMSHISFGEEGTTSPKKSISEAKQRELSGTLENESEATLKKQISGLKNKELSGHNIFAPPPEIQPRPLAARALALRESITIGESTPQNGHESAVKTAKKIPNQKLTELSGNNIFKGDDTSASVEKPLSSAKLREMSGSNIFADGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030100`
TK1151 ID	TkA07G375630
OH-1004 ID	LXL04_030100
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030100

Location Chr06:108190038-108191659 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g22260`	Dioxygenase that repairs alkylated DNA containing 1-methyladenine and 1-ethenoadenine by oxidative demethylation.	The DNA dioxygenase ALKBH2 protects Arabidopsis thaliana against methylation damage.2012 · DOI: 10.1093/nar/gks327

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030100 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006307 DNA alkylation repair Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0008198 ferrous iron binding Molecular Function

GO:0035514 DNA demethylase activity Molecular Function

GO:0035516 broad specificity oxidative DNA demethylase activity Molecular Function

GO:0051747 cytosine C-5 DNA demethylase activity Molecular Function

KEGG gene cross-reference

ath:AT2G22260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.787

Rank 1 · LXL04_030100 · OH-1004

Nucleus0.241

Rank 2 · LXL04_030100 · OH-1004

Cell membrane0.089

Rank 3 · LXL04_030100 · OH-1004

Mitochondrion0.057

Rank 4 · LXL04_030100 · OH-1004

Golgi apparatus0.037

Rank 5 · LXL04_030100 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13266.12DUF40573-280 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030100	`PF13266.12`	DUF4057	3	280	4.2e-123	411.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SIE0`	Arabidopsis thaliana	DNA oxidative demethylase ALKBH2	42.169%	Swiss-Prot	weak database homology

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