LXL04_030062 | RubberDandelionOmics

Gene overview

LXL04_030062

Reference: OH-1004 Chr: Chr06 Coordinates: 106690795-106693278 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2103 bp · LXL04_030062|LXL04_030062|OH1004|cDNA

ATGCGCTGGTCAACAGTGCTTGCAACCAAACCGTCTCTTGTTCGTGACACAGTATTTCTGTCTGGAGGTCCATACTACAACATACCCTTAGGAAGACGCGATGGCCTTAACTTTGCCACGATAAATGAGACACTGGCCAACATTCCTGCACCCACCGCAGACACAACGGCCCTTCTGACTTCTCTCGCAACAAAAGGGTTCGATACCACCGACGTGGTGGCGCTCTCTGGTGGCCATACCATCGGGATAGCGAATTGTGG...

CDS

Download CDS FASTA

2103 bp · LXL04_030062|LXL04_030062|OH1004|CDS

ATGCGCTGGTCAACAGTGCTTGCAACCAAACCGTCTCTTGTTCGTGACACAGTATTTCTGTCTGGAGGTCCATACTACAACATACCCTTAGGAAGACGCGATGGCCTTAACTTTGCCACGATAAATGAGACACTGGCCAACATTCCTGCACCCACCGCAGACACAACGGCCCTTCTGACTTCTCTCGCAACAAAAGGGTTCGATACCACCGACGTGGTGGCGCTCTCTGGTGGCCATACCATCGGGATAGCGAATTGTGG...

Protein

Download Protein FASTA

700 aa · LXL04_030062|LXL04_030062|OH1004|PROTEIN

MRWSTVLATKPSLVRDTVFLSGGPYYNIPLGRRDGLNFATINETLANIPAPTADTTALLTSLATKGFDTTDVVALSGGHTIGIANCGSFVGRIIPTQDPTLNETFAIDLRNTCPTNVTSNTTFLDVLSPNAFDNSYYADLMNRRGLFTSDQDLFTDNRTRDIVTSFAANQTLFFENFVIAMIKMGQLSVLTDTQGEIRANCSVTNAGNMCGFMFVNVLLMIVFTIIENLRALIHGACNQTVSCSDITALAARDAVFLSGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030062`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030062

Location Chr06:106690795-106693278 (+)

Description Similar to PER12: Peroxidase 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71695`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g36430`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g06730`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YPX3`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030062 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G71695

sbi:8074114

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.327

Rank 1 · LXL04_030062 · OH-1004

Cytoplasm0.316

Rank 2 · LXL04_030062 · OH-1004

Lysosome / Vacuole0.195

Rank 3 · LXL04_030062 · OH-1004

Cell membrane0.055

Rank 4 · LXL04_030062 · OH-1004

Endoplasmic reticulum0.051

Rank 5 · LXL04_030062 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase15-169 aa

PF00141.29peroxidase219-406 aa

PF00141.29peroxidase456-643 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030062	`PF00141.29`	peroxidase	15	169	3.7e-162	538.3
LXL04_030062	`PF00141.29`	peroxidase	219	406	3.7e-162	538.3
LXL04_030062	`PF00141.29`	peroxidase	456	643	3.7e-162	538.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q96520`	Arabidopsis thaliana	Peroxidase 12	63.248%	Swiss-Prot	weak database homology
`O23237`	Arabidopsis thaliana	Peroxidase 49	42.105%	Swiss-Prot	weak database homology
`Q9FG34`	Arabidopsis thaliana	Peroxidase 54	46.552%	Swiss-Prot	weak database homology
`A2YPX3`	Oryza sativa subsp. indica	Peroxidase 2	44.000%	Swiss-Prot	weak database homology

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