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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_029984
Reference: OH-1004 Chr: Chr06 Coordinates: 104971099-104976970 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2049 bp · LXL04_029984|LXL04_029984|OH1004|cDNA

ATGGATTTCGTTGAAGGAGTTGGTGAAAGCTCTTCACCGCCTAGGAGTTTTGGAGGTTTCAGCGGCTACGAGATAGTGAATGATGTGTATAATCGGTTACTGGAGATTGGCAACGACGAAGCTACTACTCAACCTGAATTTCGTGATCAATTGGCTGCTCACTTCATTCGATTACCTGCTAGTTATGCCCTGGATATCAACTTGAATAGAGTTGAAGATGTATTGCTACATCAGAAGCTCCTTATACTGGCAAAAGACCC...

CDS

Download CDS FASTA

2049 bp · LXL04_029984|LXL04_029984|OH1004|CDS

ATGGATTTCGTTGAAGGAGTTGGTGAAAGCTCTTCACCGCCTAGGAGTTTTGGAGGTTTCAGCGGCTACGAGATAGTGAATGATGTGTATAATCGGTTACTGGAGATTGGCAACGACGAAGCTACTACTCAACCTGAATTTCGTGATCAATTGGCTGCTCACTTCATTCGATTACCTGCTAGTTATGCCCTGGATATCAACTTGAATAGAGTTGAAGATGTATTGCTACATCAGAAGCTCCTTATACTGGCAAAAGACCC...

Protein

Download Protein FASTA

682 aa · LXL04_029984|LXL04_029984|OH1004|PROTEIN

MDFVEGVGESSSPPRSFGGFSGYEIVNDVYNRLLEIGNDEATTQPEFRDQLAAHFIRLPASYALDINLNRVEDVLLHQKLLILAKDPENRPVFHVRFLENYGTQVDGDEDQQEVSVGPELSHDKKPEMDVEACSKLEDLNLEVRSTSLDKGKENLDVDSFKRQDDIHVPIHEVIFSAVDKPKLLSQLSALVSDIGLNIREAHVFSTTDGYSLDVFVVDGWPLQETKTLHEAMERAIARSEGSWCGSKRSKSAIERASFVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_029984
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_029984
LocationChr06:104971099-104976970 (-)
DescriptionSimilar to STY46: Serine/threonine-protein kinase STY46
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g38470 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
At4g35780 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
At2g17700 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
At2g24360 Serine/threonine protein kinase that phosphorylates proteins on serine, threonine and tyrosine residues.
Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases.2006 · DOI: 10.1007/s11103-005-4109-7
At1g62400 Serine/threonine/tyrosine kinase involved in the control of stomatal movement in response to CO(2). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029984 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0007165 signal transduction Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0010344 seed oilbody biogenesis Biological Process
GO:0045995 regulation of embryonic development Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0071244 cellular response to carbon dioxide Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:2000030 regulation of response to red or far red light Biological Process
KEGG gene cross-reference
ath:AT1G62400
ath:AT2G17700
ath:AT2G24360
ath:AT4G35780
ath:AT4G38470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.463
Rank 1 · LXL04_029984 · OH-1004
Nucleus0.315
Rank 2 · LXL04_029984 · OH-1004
Cell membrane0.264
Rank 3 · LXL04_029984 · OH-1004
Golgi apparatus0.093
Rank 4 · LXL04_029984 · OH-1004
Endoplasmic reticulum0.079
Rank 5 · LXL04_029984 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01842.32ACT172-219 aa
PF07714.24PK_Tyr_Ser-Thr269-515 aa
PF00069.32Pkinase270-512 aa
PF03109.23ABC1339-415 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_029984PF01842.32ACT1722197e-0626.4
LXL04_029984PF07714.24PK_Tyr_Ser-Thr2695152.5e-73247.3
LXL04_029984PF00069.32Pkinase2705126.6e-58196.9
LXL04_029984PF03109.23ABC13394153e-0730.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JTP5Arabidopsis thalianaSerine/threonine-protein kinase STY4650.888%Swiss-Protstrong database homology
Q8RWL6Arabidopsis thalianaSerine/threonine-protein kinase STY1747.826%Swiss-Protmoderate database homology
O22558Arabidopsis thalianaSerine/threonine-protein kinase STY847.940%Swiss-Protmoderate database homology
Q9ZQ31Arabidopsis thalianaSerine/threonine-protein kinase STY1347.656%Swiss-Protweak database homology
Q2MHE4Arabidopsis thalianaSerine/threonine/tyrosine-protein kinase HT147.451%Swiss-Protweak database homology

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