LXL04_029876 | RubberDandelionOmics

Gene overview

LXL04_029876

Reference: OH-1004 Chr: Chr06 Coordinates: 102661930-102663573 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1521 bp · LXL04_029876|LXL04_029876|OH1004|cDNA

ATGTGCATGTGTATCAACTTATGCATGAATACATCAATTTCTTACATCATATCTTATATTTCCCTAATATACAAGCAAACCATCCCTTACCATACTCAAATCCATCTCATAGTTCCCATGGTAATGGAGGAAATGAAGATGATAACAAGCATAGGCTTCCCTCTTTTCACAATGGGGTTGGTTAGTTACCTGAAAAACATGATTGCAGTTGCATGCATGGGCAAAATGGGAAGACTTGAGTTAGCGGGTGGTGCATTAGC...

CDS

Download CDS FASTA

1521 bp · LXL04_029876|LXL04_029876|OH1004|CDS

ATGTGCATGTGTATCAACTTATGCATGAATACATCAATTTCTTACATCATATCTTATATTTCCCTAATATACAAGCAAACCATCCCTTACCATACTCAAATCCATCTCATAGTTCCCATGGTAATGGAGGAAATGAAGATGATAACAAGCATAGGCTTCCCTCTTTTCACAATGGGGTTGGTTAGTTACCTGAAAAACATGATTGCAGTTGCATGCATGGGCAAAATGGGAAGACTTGAGTTAGCGGGTGGTGCATTAGC...

Protein

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506 aa · LXL04_029876|LXL04_029876|OH1004|PROTEIN

MCMCINLCMNTSISYIISYISLIYKQTIPYHTQIHLIVPMVMEEMKMITSIGFPLFTMGLVSYLKNMIAVACMGKMGRLELAGGALAIGFTNITGYSVLSGLAMGMEPLCSQAFGSRNLTMVNLTLQRTIIILLFASLPIGVLWVNLEPLMIFLHQDPDITRVASLYCRYAIPDLIVNSFLYPLKIFLRSKGATWSLMWCTLIPTLVHYPITNTLAFTLHLGVKGVAISTFLTNLITSVLILGYIFSTHNTPKSETTVKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029876`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029876

Location Chr06:102661930-102663573 (+)

Description Similar to DTX55: Protein DETOXIFICATION 55

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49130`	Protein DETOXIFICATION 55.	No verified direct reference in this release
`At1g71870`	May function as a multidrug and toxin extrusion transporter in the export of IAA-conjugates from the cytoplasm into peroxisomes.	No verified direct reference in this release
`At4g29140`	Functions as a multidrug and toxin extrusion transporter that negatively regulates plant disease resistance.	ADP1 affects plant architecture by regulating local auxin biosynthesis.2014 · DOI: 10.1371/journal.pgen.1003954 A subgroup of MATE transporter genes regulates hypocotyl cell elongation in Arabidopsis.2015 · DOI: 10.1093/jxb/erv344
`At5g19700`	May act as a negative regulator of hypocotyl cell elongation in the light.	A subgroup of MATE transporter genes regulates hypocotyl cell elongation in Arabidopsis.2015 · DOI: 10.1093/jxb/erv344
`At1g58340`	Functions as a multidrug and toxin extrusion transporter.	A Golgi-localized MATE transporter mediates iron homoeostasis under osmotic stress in Arabidopsis.2012 · DOI: 10.1042/bj20111311 A subgroup of MATE transporter genes regulates hypocotyl cell elongation in Arabidopsis.2015 · DOI: 10.1093/jxb/erv344

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029876 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006826 iron ion transport Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009624 response to nematode Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010015 root morphogenesis Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010600 regulation of auxin biosynthetic process Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0046620 regulation of organ growth Biological Process

KEGG gene cross-reference

ath:AT1G58340

ath:AT1G71870

ath:AT4G29140

ath:AT5G19700

ath:AT5G49130

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.446

Rank 1 · LXL04_029876 · OH-1004

Lysosome / Vacuole0.272

Rank 2 · LXL04_029876 · OH-1004

Cytoplasm0.119

Rank 3 · LXL04_029876 · OH-1004

Endoplasmic reticulum0.107

Rank 4 · LXL04_029876 · OH-1004

Golgi apparatus0.070

Rank 5 · LXL04_029876 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01554.24MatE54-211 aa

PF01554.24MatE275-437 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029876	`PF01554.24`	MatE	54	211	6.2e-61	205.5
LXL04_029876	`PF01554.24`	MatE	275	437	6.2e-61	205.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FH21`	Arabidopsis thaliana	Protein DETOXIFICATION 55	60.373%	Swiss-Prot	strong database homology
`Q9LE20`	Arabidopsis thaliana	Protein DETOXIFICATION 54	47.379%	Swiss-Prot	moderate database homology
`Q9SZE2`	Arabidopsis thaliana	Protein DETOXIFICATION 51	47.216%	Swiss-Prot	moderate database homology
`Q4PSF4`	Arabidopsis thaliana	Protein DETOXIFICATION 52	46.584%	Swiss-Prot	moderate database homology
`Q9SLV0`	Arabidopsis thaliana	Protein DETOXIFICATION 48	46.847%	Swiss-Prot	moderate database homology

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