LXL04_029815 | RubberDandelionOmics

Gene overview

LXL04_029815

Reference: OH-1004 Chr: Chr06 Coordinates: 101101967-101103594 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

546 bp · LXL04_029815|LXL04_029815|OH1004|cDNA

ATGGCTGATAGTAATCCAGGAGTCAAATTCAACCACATCAGCTTTGAAAGATTACCAAATCCTTTCTCCGTCGGGATGCTTTCAAATCATGGATCTTCGACTATTGGTTTACCAAATGAATCAAGTGAGGTTGTTGTTGGTAGTACAAGAGATCAGTTAATTGGAAGCAAGTTAAGAACAAGATGGCCTGATGACAATAACTTTTATGAAGCTGTCATAGTCGAATATAATCCTGTAcagGGACTACATGCACTGCTTTA...

CDS

Download CDS FASTA

546 bp · LXL04_029815|LXL04_029815|OH1004|CDS

ATGGCTGATAGTAATCCAGGAGTCAAATTCAACCACATCAGCTTTGAAAGATTACCAAATCCTTTCTCCGTCGGGATGCTTTCAAATCATGGATCTTCGACTATTGGTTTACCAAATGAATCAAGTGAGGTTGTTGTTGGTAGTACAAGAGATCAGTTAATTGGAAGCAAGTTAAGAACAAGATGGCCTGATGACAATAACTTTTATGAAGCTGTCATAGTCGAATATAATCCTGTACAGGGACTACATGCACTGCTTTA...

Protein

Download Protein FASTA

181 aa · LXL04_029815|LXL04_029815|OH1004|PROTEIN

MADSNPGVKFNHISFERLPNPFSVGMLSNHGSSTIGLPNESSEVVVGSTRDQLIGSKLRTRWPDDNNFYEAVIVEYNPVQGLHALLYNKNTPQESFEWVNLKENPVDMEGLKNAHIRDGAAVVQYLAWLDMQMQELYGASGYFKESESQKTKTPLGDAKLTEVSVSDKLEEFHAAKKGNAV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029815`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029815

Location Chr06:101101967-101103594 (-)

Description Similar to APP1: Aminopeptidase P1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36760`	Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides, such as Arg-Pro-Pro (By similarity).	Identification, purification, and molecular cloning of N-1-naphthylphthalmic acid-binding plasma membrane-associated aminopeptidases from Arabidopsis.2002 · DOI: 10.1104/pp.010519
`At2g44440`	Probably involved in the regulation of chromatin states (Probable).	EMSY-like genes are required for full RPP7-mediated race-specific immunity and basal defense in Arabidopsis.2011 · DOI: 10.1094/mpmi-05-11-0123
`At5g13020`	Probably involved in the regulation of chromatin states (Probable).	No verified direct reference in this release
`At5g06780`	Probably involved in the regulation of chromatin states (Probable).	EMSY-like genes are required for full RPP7-mediated race-specific immunity and basal defense in Arabidopsis.2011 · DOI: 10.1094/mpmi-05-11-0123

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029815 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006508 proteolysis Biological Process

GO:0009408 response to heat Biological Process

GO:0009609 response to symbiotic bacterium Biological Process

GO:0009877 nodulation Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051607 defense response to virus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT2G44440

ath:AT4G36760

ath:AT5G06780

ath:AT5G13020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.795

Rank 1 · LXL04_029815 · OH-1004

Cytoplasm0.261

Rank 2 · LXL04_029815 · OH-1004

Cell membrane0.047

Rank 3 · LXL04_029815 · OH-1004

Endoplasmic reticulum0.032

Rank 4 · LXL04_029815 · OH-1004

Plastid0.018

Rank 5 · LXL04_029815 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JQH3`	Arabidopsis thaliana	Aminopeptidase P1	69.333%	Swiss-Prot	weak database homology
`Q08A72`	Arabidopsis thaliana	Protein EMSY-LIKE 4	48.649%	Swiss-Prot	weak database homology
`F4K2F0`	Arabidopsis thaliana	Protein EMSY-LIKE 3	59.322%	Swiss-Prot	weak database homology
`Q9FG29`	Arabidopsis thaliana	Protein EMSY-LIKE 2	55.556%	Swiss-Prot	weak database homology

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