LXL04_029796 | RubberDandelionOmics

Gene overview

LXL04_029796

Reference: OH-1004 Chr: Chr06 Coordinates: 100622183-100623376 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

669 bp · LXL04_029796|LXL04_029796|OH1004|cDNA

ATGCGGCTGTTTCCAATGAATTCGTCTAGAGAGCTTAGAAATGGAGGAAATGATCATGGCTTACTGTATCTCAATGTATATGATCTCACCCCTGTCAATAACTACCTCTACTGGTTGGGCTTCGGAATCTTCCATTCTGGTATCGAAGTATACGACATGGAATACGCATTTGGAGCACACGAGTACCCAACCAGTGGAGTCTTTGAAGTTGAACCAAAAAGCTGCCCGGGTTTTATCTTCAGGCGGTCAATCCCATTGGG...

CDS

Download CDS FASTA

663 bp · LXL04_029796|LXL04_029796|OH1004|CDS

ATGCGGCTGTTTCCAATGAATTCGTCTAGAGAGCTTAGAAATGGAGGAAATGATCATGGCTTACTGTATCTCAATGTATATGATCTCACCCCTGTCAATAACTACCTCTACTGGTTGGGCTTCGGAATCTTCCATTCTGGTATCGAAGTATACGACATGGAATACGCATTTGGAGCACACGAGTACCCAACCAGTGGAGTCTTTGAAGTTGAACCAAAAAGCTGCCCGGGTTTTATCTTCAGGCGGTCAATCCCATTGGG...

Protein

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220 aa · LXL04_029796|LXL04_029796|OH1004|PROTEIN

MRLFPMNSSRELRNGGNDHGLLYLNVYDLTPVNNYLYWLGFGIFHSGIEVYDMEYAFGAHEYPTSGVFEVEPKSCPGFIFRRSIPLGSTNMSRTEFRSFMEHLSNKYHGDTYHLIAKNCNHFTNEVSMRLTGKPIPGWVNRLAKLGSFCNCLLPENIQVAAVRHLPDHATISDEESESGDSSLTMGSEEDDVDDHHRLTESNSDVAFFQEKPVRLAKDLL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029796`
TK1151 ID	TkA07G348150
OH-1004 ID	LXL04_029796
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029796

Location Chr06:100622183-100623376 (-)

Description Similar to At4g17486: DeSI-like protein At4g17486

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17486`	DeSI-like protein At4g17486.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029796 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0016579 protein deubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004843 cysteine-type deubiquitinase activity Molecular Function

GO:0008474 palmitoyl-(protein) hydrolase activity Molecular Function

GO:0052816 long-chain fatty acyl-CoA hydrolase activity Molecular Function

GO:0061578 K63-linked deubiquitinase activity Molecular Function

GO:0101005 deubiquitinase activity Molecular Function

GO:1990380 K48-linked deubiquitinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G17486

cel:CELE_F36D4.5

gga:421494

mmu:78825

xla:496020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.419

Rank 1 · LXL04_029796 · OH-1004

Nucleus0.208

Rank 2 · LXL04_029796 · OH-1004

Golgi apparatus0.197

Rank 3 · LXL04_029796 · OH-1004

Cell membrane0.195

Rank 4 · LXL04_029796 · OH-1004

Endoplasmic reticulum0.192

Rank 5 · LXL04_029796 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05903.21Peptidase_C9723-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029796	`PF05903.21`	Peptidase_C97	23	156	1.6e-52	178.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93VG8`	Arabidopsis thaliana	DeSI-like protein At4g17486	64.141%	Swiss-Prot	strong database homology

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