LXL04_029769 | RubberDandelionOmics

Gene overview

LXL04_029769

Reference: OH-1004 Chr: Chr06 Coordinates: 99937228-99938675 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1116 bp · LXL04_029769|LXL04_029769|OH1004|cDNA

ATGTTAGCTGCTACTCTCGATGGCAATAAAACATGCCGCCACTTTCACCTTCCTGAAGTTCTTGCAGCAACCAATAACTTTAATGAATCGTTAGTAATTAGGCGAGGCGGGTTTGGAAAAGTTTACATGGGTAACGTCATTAATGGATCAAGTGTTGTTCTTGCTGCCATTAAAAGGTTGGATTCCACGTCGAGTCAAGGGGCATCAGAGTTCTGGGCGGAAGTTGAGACGCTGTCCAAATTGCGTCACTGTCACCTTGT...

CDS

Download CDS FASTA

1116 bp · LXL04_029769|LXL04_029769|OH1004|CDS

ATGTTAGCTGCTACTCTCGATGGCAATAAAACATGCCGCCACTTTCACCTTCCTGAAGTTCTTGCAGCAACCAATAACTTTAATGAATCGTTAGTAATTAGGCGAGGCGGGTTTGGAAAAGTTTACATGGGTAACGTCATTAATGGATCAAGTGTTGTTCTTGCTGCCATTAAAAGGTTGGATTCCACGTCGAGTCAAGGGGCATCAGAGTTCTGGGCGGAAGTTGAGACGCTGTCCAAATTGCGTCACTGTCACCTTGT...

Protein

Download Protein FASTA

371 aa · LXL04_029769|LXL04_029769|OH1004|PROTEIN

MLAATLDGNKTCRHFHLPEVLAATNNFNESLVIRRGGFGKVYMGNVINGSSVVLAAIKRLDSTSSQGASEFWAEVETLSKLRHCHLVSLFDHLHKLNTPLSWLQRLKICIGAARGLDYLHTGTGIDVGVTHRDVKSSNILLHNNWAAKISDFGLSKVGPTNQPVTYVNTLCQRKPALDWSLAEEQQNLARWATESIKEGNLKHIIDPGIRGEISPKCLKKFVGVAERCLHNNPKQRPTMAEVVVSLESALTIQEKTNKSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029769`
TK1151 ID	TkA07G345880
OH-1004 ID	LXL04_029769
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.500
Protein coverage (%)	TK1151 96.519 / OH-1004 73.046 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029769

Location Chr06:99937228-99938675 (-)

Description Similar to FER: Receptor-like protein kinase FERONIA

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At4g39110`	Probable receptor-like protein kinase At4g39110.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029769 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

KEGG gene cross-reference

ath:AT3G04690

ath:AT3G51550

ath:AT4G39110

ath:AT5G28680

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.510

Rank 1 · LXL04_029769 · OH-1004

Cytoplasm0.298

Rank 2 · LXL04_029769 · OH-1004

Nucleus0.250

Rank 3 · LXL04_029769 · OH-1004

Endoplasmic reticulum0.069

Rank 4 · LXL04_029769 · OH-1004

Golgi apparatus0.048

Rank 5 · LXL04_029769 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr33-90 aa

PF07714.24PK_Tyr_Ser-Thr88-158 aa

PF00069.32Pkinase108-167 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029769	`PF07714.24`	PK_Tyr_Ser-Thr	33	90	3.5e-23	82.9
LXL04_029769	`PF07714.24`	PK_Tyr_Ser-Thr	88	158	3.5e-23	82.9
LXL04_029769	`PF00069.32`	Pkinase	108	167	1.4e-18	67.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCZ4`	Arabidopsis thaliana	Receptor-like protein kinase FERONIA	42.424%	Swiss-Prot	moderate database homology
`Q3E8W4`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR2	42.951%	Swiss-Prot	moderate database homology
`Q9SR05`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR1	42.244%	Swiss-Prot	moderate database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	39.286%	Swiss-Prot	moderate database homology
`Q9T020`	Arabidopsis thaliana	Probable receptor-like protein kinase At4g39110	41.946%	Swiss-Prot	moderate database homology

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