LXL04_029561 | RubberDandelionOmics

Gene overview

LXL04_029561

Reference: OH-1004 Chr: Chr06 Coordinates: 93877621-93880083 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

873 bp · LXL04_029561|LXL04_029561|OH1004|cDNA

ATGCTTACCTTCACCACAGCCTCGATCTCACCATTTCCTCTCCACGCTTGCACGCATGCTTCAAATGGGGCGCCTTCTTCTCCGATTTCCCTCTATATTTACCAAgatttccctctctatattCCTTCATCCACTTCTTACTCTCCGACCTATCTGAAGCATATCACCGGTAATCTCCTACCATCCCCGACGCAGGCATTTATCGGACCATACCGGCGCGTGCTTCTATTCATTCCCATCTCTGTGTTGTTGGACCATAC...

CDS

Download CDS FASTA

873 bp · LXL04_029561|LXL04_029561|OH1004|CDS

ATGCTTACCTTCACCACAGCCTCGATCTCACCATTTCCTCTCCACGCTTGCACGCATGCTTCAAATGGGGCGCCTTCTTCTCCGATTTCCCTCTATATTTACCAAGATTTCCCTCTCTATATTCCTTCATCCACTTCTTACTCTCCGACCTATCTGAAGCATATCACCGGTAATCTCCTACCATCCCCGACGCAGGCATTTATCGGACCATACCGGCGCGTGCTTCTATTCATTCCCATCTCTGTGTTGTTGGACCATAC...

Protein

Download Protein FASTA

290 aa · LXL04_029561|LXL04_029561|OH1004|PROTEIN

MLTFTTASISPFPLHACTHASNGAPSSPISLYIYQDFPLYIPSSTSYSPTYLKHITGNLLPSPTQAFIGPYRRVLLFIPISVLLDHTGSPLHDHHTDAIQSSQLNHTGSPLSNRRSLPKHLHRDHYFVETVPVLPSSPLFRSTTSANSFPQPPALPSLPPPPALSTSDLKETFHIGPLEGEESRLNLWPSKGITFLENVNGEILQKSIEIRSEELHNDVSQVLLGYKQMLKNGAWEQCMSALEPPVKERLSKFVPVHLQP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029561`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029561

Location Chr06:93877621-93880083 (+)

Description Similar to TRN1: Transportin-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16950`	Functions in nuclear protein import as nuclear transport receptor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0691500`	Functions in nuclear protein import as nuclear transport receptor.	No verified direct reference in this release
`UniProt: B8ARW2`	Functions in nuclear protein import as nuclear transport receptor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029561 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006606 protein import into nucleus Biological Process

GO:0051170 import into nucleus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0008139 nuclear localization sequence binding Molecular Function

GO:0031267 small GTPase binding Molecular Function

GO:0061608 nuclear import signal receptor activity Molecular Function

KEGG gene cross-reference

ath:AT2G16950

dosa:Os04g0691500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.388

Rank 1 · LXL04_029561 · OH-1004

Nucleus0.382

Rank 2 · LXL04_029561 · OH-1004

Endoplasmic reticulum0.148

Rank 3 · LXL04_029561 · OH-1004

Cell membrane0.132

Rank 4 · LXL04_029561 · OH-1004

Mitochondrion0.113

Rank 5 · LXL04_029561 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H0U4`	Arabidopsis thaliana	Transportin-1	62.222%	Swiss-Prot	weak database homology
`B9FDR3`	Oryza sativa subsp. japonica	Transportin-1	64.444%	Swiss-Prot	weak database homology
`B8ARW2`	Oryza sativa subsp. indica	Transportin-1	64.444%	Swiss-Prot	weak database homology

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