LXL04_029517 | RubberDandelionOmics

Gene overview

LXL04_029517

Reference: OH-1004 Chr: Chr06 Coordinates: 92754075-92755839 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

705 bp · LXL04_029517|LXL04_029517|OH1004|cDNA

ATGAGTTCTCAAATCTACAGATCTGCTTCACGAGTTGCTAGGTCTTTTCTCTCTTCGTCTTCCAAGCATCGTGTTGTTTCCGAAGGACGAACAGCTGCAACAGCAGCAGCAGTATCCTTCAAAGGAACGTTGCCAGCTCTATCTTCTTTCAGAGATTCTACAAATACTTCCAACAAATGGATTACCGTAGCTCTTGTACTTCCTGCTGCAGCATACATGCTTCAGGACCAAGAGGCACATGCAGCACAGATGGAGCGAAC...

CDS

Download CDS FASTA

705 bp · LXL04_029517|LXL04_029517|OH1004|CDS

ATGAGTTCTCAAATCTACAGATCTGCTTCACGAGTTGCTAGGTCTTTTCTCTCTTCGTCTTCCAAGCATCGTGTTGTTTCCGAAGGACGAACAGCTGCAACAGCAGCAGCAGTATCCTTCAAAGGAACGTTGCCAGCTCTATCTTCTTTCAGAGATTCTACAAATACTTCCAACAAATGGATTACCGTAGCTCTTGTACTTCCTGCTGCAGCATACATGCTTCAGGACCAAGAGGCACATGCAGCACAGATGGAGCGAAC...

Protein

Download Protein FASTA

234 aa · LXL04_029517|LXL04_029517|OH1004|PROTEIN

MSSQIYRSASRVARSFLSSSSKHRVVSEGRTAATAAAVSFKGTLPALSSFRDSTNTSNKWITVALVLPAAAYMLQDQEAHAAQMERTFIAIKPDGVQRGLISEIIARFERKGFKLVAIKLVVPSKAFARKHYHDLKDRPFFNGLCNFLSSGPVLAMVWEGEGVIKYGRKLIGATDPFKSEPGTIRGDLAIVVGRNIIHGSDGPETAKNEINLWFKPEELTNYTSNQEKWVYGVN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029517`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029517

Location Chr06:92754075-92755839 (-)

Description Similar to NDK4: Nucleoside diphosphate kinase 4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23900`	Major role in the synthesis of nucleoside triphosphates other than ATP.	No verified direct reference in this release
`At4g11010`	Major role in the synthesis of nucleoside triphosphates other than ATP.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029517 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006183 GTP biosynthetic process Biological Process

GO:0006228 UTP biosynthetic process Biological Process

GO:0006241 CTP biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005758 mitochondrial intermembrane space Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0004550 nucleoside diphosphate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT4G11010

ath:AT4G23900

pmf:P9303_28301

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.938

Rank 1 · LXL04_029517 · OH-1004

Cytoplasm0.052

Rank 2 · LXL04_029517 · OH-1004

Nucleus0.040

Rank 3 · LXL04_029517 · OH-1004

Plastid0.026

Rank 4 · LXL04_029517 · OH-1004

Cell membrane0.019

Rank 5 · LXL04_029517 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00334.25NDK85-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029517	`PF00334.25`	NDK	85	218	3.4e-54	183.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LAH8`	Arabidopsis thaliana	Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial	75.949%	Swiss-Prot	strong database homology
`O49203`	Arabidopsis thaliana	Nucleoside diphosphate kinase III, chloroplastic/mitochondrial	73.950%	Swiss-Prot	strong database homology

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