LXL04_029507 | RubberDandelionOmics

Gene overview

LXL04_029507

Reference: OH-1004 Chr: Chr06 Coordinates: 92626621-92627896 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

948 bp · LXL04_029507|LXL04_029507|OH1004|cDNA

ATGGAAAACAACAATCAATCGTCTTTTTGGCAGTTCAGTGACCAGCTTCGTGGTCAGAGCAACAACCTTTCAAATCTCTCGCTCAACGACTCCATCTGGAGCACCTCATACGCCTCCAAACGCCCGGAAAAAGAACGCCGGAACTTCGACATACGTGTCGGCGGTGAGTTCACCAACTCAGGTACCATCAACACCAACAACTCCGATTTTAATGGGTTTAACTTTGACTGGAAAGTTGGGTCGAGTAATCAGAACCAACC...

CDS

Download CDS FASTA

948 bp · LXL04_029507|LXL04_029507|OH1004|CDS

ATGGAAAACAACAATCAATCGTCTTTTTGGCAGTTCAGTGACCAGCTTCGTGGTCAGAGCAACAACCTTTCAAATCTCTCGCTCAACGACTCCATCTGGAGCACCTCATACGCCTCCAAACGCCCGGAAAAAGAACGCCGGAACTTCGACATACGTGTCGGCGGTGAGTTCACCAACTCAGGTACCATCAACACCAACAACTCCGATTTTAATGGGTTTAACTTTGACTGGAAAGTTGGGTCGAGTAATCAGAACCAACC...

Protein

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315 aa · LXL04_029507|LXL04_029507|OH1004|PROTEIN

MENNNQSSFWQFSDQLRGQSNNLSNLSLNDSIWSTSYASKRPEKERRNFDIRVGGEFTNSGTINTNNSDFNGFNFDWKVGSSNQNQPGDFGINGGFNKGIYSKPSLNFATTNVNFEKNGFKKDGKFGKNNDDDHHLFGSKHGKNKKNNSNVNTTEKDSNKNSVDKRFKTLPPSESLPRNETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRQITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPSAWEDKKNPGES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029507`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029507

Location Chr06:92626621-92627896 (+)

Description Similar to B2 protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42050`	Contributes to the initial phase of responses to abiotic and biotic stress signals (Probable).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029507 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0034976 response to endoplasmic reticulum stress Biological Process

GO:0043067 regulation of programmed cell death Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1902074 response to salt Biological Process

GO:1904350 regulation of protein catabolic process in the vacuole Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT5G42050

gmx:100808989

gmx:547685

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.487

Rank 1 · LXL04_029507 · OH-1004

Nucleus0.441

Rank 2 · LXL04_029507 · OH-1004

Cell membrane0.119

Rank 3 · LXL04_029507 · OH-1004

Endoplasmic reticulum0.064

Rank 4 · LXL04_029507 · OH-1004

Plastid0.042

Rank 5 · LXL04_029507 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10539.15Dev_Cell_Death183-310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029507	`PF10539.15`	Dev_Cell_Death	183	310	1.8e-39	135.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RXN8`	Arabidopsis thaliana	DCD domain-containing protein NRP	56.022%	Swiss-Prot	strong database homology

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