LXL04_029104 | RubberDandelionOmics

Gene overview

LXL04_029104

Reference: OH-1004 Chr: Chr06 Coordinates: 80967655-80969271 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1617 bp · LXL04_029104|LXL04_029104|OH1004|cDNA

ATGAATCGTGAAAGGACAAGAAGAAATCGAGGAGTACCAGATGTTCTAGAGTTGATGCACCATATACAATCGCGGTTGCCGGTAAAAGACGCGGCTCGCACCAGTATCTTGTCCAAGTATTGGCGACACGCTTGGTCTACCATCCCTAACCTCAGGTTTCATGTTCACAAGGAACAAGAAAGAGGGCACATGAAGTTGGTGGATATCGACCATACTCTAACAAGGTATCTTCATAGTAACATACAAATCGAAAGGTTTGA...

CDS

Download CDS FASTA

1617 bp · LXL04_029104|LXL04_029104|OH1004|CDS

ATGAATCGTGAAAGGACAAGAAGAAATCGAGGAGTACCAGATGTTCTAGAGTTGATGCACCATATACAATCGCGGTTGCCGGTAAAAGACGCGGCTCGCACCAGTATCTTGTCCAAGTATTGGCGACACGCTTGGTCTACCATCCCTAACCTCAGGTTTCATGTTCACAAGGAACAAGAAAGAGGGCACATGAAGTTGGTGGATATCGACCATACTCTAACAAGGTATCTTCATAGTAACATACAAATCGAAAGGTTTGA...

Protein

Download Protein FASTA

538 aa · LXL04_029104|LXL04_029104|OH1004|PROTEIN

MNRERTRRNRGVPDVLELMHHIQSRLPVKDAARTSILSKYWRHAWSTIPNLRFHVHKEQERGHMKLVDIDHTLTRYLHSNIQIERFELKIVIKNQESASLVEKWIRSVATKSSLKEISLTIRLNGASLHLPDEIFSGENLTKISVSARWLGIHKVWMTTAHNPKCGSLRELYLYCVRINEEVLHDIFSSCRLLVKIQLLRCSQGLNTIKVKNLHFLQHLEIITDETDNTALEINHVPNLQMLICKATIAREPTTPFNTHS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029104`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029104

Location Chr06:80967655-80969271 (+)

Description Similar to At5g03100: F-box protein At5g03100

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03100`	F-box protein At5g03100.	No verified direct reference in this release
`At3g28410`	Putative F-box/LRR-repeat protein At3g28410.	No verified direct reference in this release
`At3g59230`	Putative F-box/LRR-repeat protein At3g59230.	No verified direct reference in this release
`At3g03040`	F-box protein At3g03040.	No verified direct reference in this release
`At3g18150`	Putative F-box/LRR-repeat protein At3g18150.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029104 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT3G03040

ath:AT3G18150

ath:AT3G28410

ath:AT3G59230

ath:AT5G03100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.871

Rank 1 · LXL04_029104 · OH-1004

Cytoplasm0.158

Rank 2 · LXL04_029104 · OH-1004

Cell membrane0.047

Rank 3 · LXL04_029104 · OH-1004

Endoplasmic reticulum0.038

Rank 4 · LXL04_029104 · OH-1004

Plastid0.016

Rank 5 · LXL04_029104 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622.2LRR_At1g61320_AtMIF178-242 aa

PF24758.2LRR_At5g56370101-248 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029104	`PF23622.2`	LRR_At1g61320_AtMIF1	78	242	2.8e-12	47.5
LXL04_029104	`PF24758.2`	LRR_At5g56370	101	248	1.6e-15	58.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q501G5`	Arabidopsis thaliana	F-box protein At5g03100	26.147%	Swiss-Prot	weak database homology
`Q9LSJ3`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g28410	27.411%	Swiss-Prot	weak database homology
`Q9LX48`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g59230	25.439%	Swiss-Prot	weak database homology
`Q9LDJ9`	Arabidopsis thaliana	F-box protein At3g03040	28.384%	Swiss-Prot	weak database homology
`Q9LV26`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g18150	27.727%	Swiss-Prot	weak database homology

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