LXL04_028996 | RubberDandelionOmics

Gene overview

LXL04_028996

Reference: OH-1004 Chr: Chr06 Coordinates: 77286861-77293775 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2121 bp · LXL04_028996|LXL04_028996|OH1004|cDNA

ATGTTGTCCGTCAGAAAACAGTTCGAACACCTTAAAATACAATTAGCAGCTATAATATCAACAACCAACAATTTTGCTGAAGACAAATGCATCGGAAAAGGAGGATTTGGGAAAGTTTACAAGGGAGAACTTGTCCATTCGAAGGGCCAATCTGTGGTTGCTTTAAAGCGTTTAGACAGTACATTTGGGCAAGGAGACCCTGAATTTTGGAAGGAGATCATTATGCTTTCCATTTACAGACATGAAAATATTGTCTCCCT...

CDS

Download CDS FASTA

2121 bp · LXL04_028996|LXL04_028996|OH1004|CDS

ATGTTGTCCGTCAGAAAACAGTTCGAACACCTTAAAATACAATTAGCAGCTATAATATCAACAACCAACAATTTTGCTGAAGACAAATGCATCGGAAAAGGAGGATTTGGGAAAGTTTACAAGGGAGAACTTGTCCATTCGAAGGGCCAATCTGTGGTTGCTTTAAAGCGTTTAGACAGTACATTTGGGCAAGGAGACCCTGAATTTTGGAAGGAGATCATTATGCTTTCCATTTACAGACATGAAAATATTGTCTCCCT...

Protein

Download Protein FASTA

706 aa · LXL04_028996|LXL04_028996|OH1004|PROTEIN

MLSVRKQFEHLKIQLAAIISTTNNFAEDKCIGKGGFGKVYKGELVHSKGQSVVALKRLDSTFGQGDPEFWKEIIMLSIYRHENIVSLLGFCDERGEKILVYEYASKRSLDLYLNSNALTWVRRLNICIGVARGLAYLHDPAGSQQRVLHRDIKSSNILLDENWNAKISDLGLSKFGPANQQYTFLVSRAVGTFGYCDPLYVETGLLTKESDVYSFGVVMFEVLCGRLCIDNKSIHQSFTELVRKCYKRNNISEIIFSNIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028996`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028996

Location Chr06:77286861-77293775 (-)

Description Similar to FH3: Formin-like protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31810`	Formin-like protein 14.	No verified direct reference in this release
`At2g25050`	Formin-like protein 18.	No verified direct reference in this release
`At3g32400`	Formin-like protein 17.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0119300`	Formin-like protein 3.	No verified direct reference in this release
`Os07g0596300`	Formin-like protein 5.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028996 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009556 microsporogenesis Biological Process

GO:0051017 actin filament bundle assembly Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005819 spindle Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0009574 preprophase band Cellular Component

GO:0015630 microtubule cytoskeleton Cellular Component

GO:0003779 actin binding Molecular Function

GO:0004721 phosphoprotein phosphatase activity Molecular Function

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT1G31810

ath:AT2G25050

ath:AT3G32400

dosa:Os07g0596300

dosa:Os10g0119300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.538

Rank 1 · LXL04_028996 · OH-1004

Cell membrane0.281

Rank 2 · LXL04_028996 · OH-1004

Nucleus0.247

Rank 3 · LXL04_028996 · OH-1004

Golgi apparatus0.063

Rank 4 · LXL04_028996 · OH-1004

Endoplasmic reticulum0.053

Rank 5 · LXL04_028996 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase26-294 aa

PF07714.24PK_Tyr_Ser-Thr28-296 aa

PF02181.29FH2311-493 aa

PF02181.29FH2514-670 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028996	`PF00069.32`	Pkinase	26	294	8.1e-42	144.1
LXL04_028996	`PF07714.24`	PK_Tyr_Ser-Thr	28	296	2.4e-41	142.4
LXL04_028996	`PF02181.29`	FH2	311	493	1.4e-79	268.7
LXL04_028996	`PF02181.29`	FH2	514	670	1.4e-79	268.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C6S1`	Arabidopsis thaliana	Formin-like protein 14	50.404%	Swiss-Prot	moderate database homology
`Q9SK28`	Arabidopsis thaliana	Formin-like protein 18	44.898%	Swiss-Prot	moderate database homology
`Q9LH02`	Arabidopsis thaliana	Formin-like protein 17	43.622%	Swiss-Prot	moderate database homology
`Q7G6K7`	Oryza sativa subsp. japonica	Formin-like protein 3	53.619%	Swiss-Prot	moderate database homology
`Q84ZL0`	Oryza sativa subsp. japonica	Formin-like protein 5	46.114%	Swiss-Prot	moderate database homology

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