LXL04_028791 | RubberDandelionOmics

Gene overview

LXL04_028791

Reference: OH-1004 Chr: Chr06 Coordinates: 63796192-63800676 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1605 bp · LXL04_028791|LXL04_028791|OH1004|cDNA

ATGGATTTCATGAAGGTGATCGATCAAACTGTCCGTGAGATAAAGAGAGAGGTGAATTTGAAAGTATTAAAGGTTCCTGAGATTGAACAGAAGGTATTAGATGCAACAGATGACGAACCGTGGGGTCCACATGGCACTGCATTGGCGGAGATTGCACAGGCGACTAAGAAATTCTCTGAATGTCAGATGGTTATGAATGTTGTATGGGCTAGACTAACCGAAACCGACCGTAATTGGCGTCATGTCTACAAGGCCTTAGC...

CDS

Download CDS FASTA

1605 bp · LXL04_028791|LXL04_028791|OH1004|CDS

ATGGATTTCATGAAGGTGATCGATCAAACTGTCCGTGAGATAAAGAGAGAGGTGAATTTGAAAGTATTAAAGGTTCCTGAGATTGAACAGAAGGTATTAGATGCAACAGATGACGAACCGTGGGGTCCACATGGCACTGCATTGGCGGAGATTGCACAGGCGACTAAGAAATTCTCTGAATGTCAGATGGTTATGAATGTTGTATGGGCTAGACTAACCGAAACCGACCGTAATTGGCGTCATGTCTACAAGGCCTTAGC...

Protein

Download Protein FASTA

534 aa · LXL04_028791|LXL04_028791|OH1004|PROTEIN

MDFMKVIDQTVREIKREVNLKVLKVPEIEQKVLDATDDEPWGPHGTALAEIAQATKKFSECQMVMNVVWARLTETDRNWRHVYKALAVIEYLVANGSERAVDDIIEHTFQISSLSCFEYVEPNGKDSGINVRKKVETIVALLNDKDKIQAARNKAAATRDKYVGLSSTGITFKSGSAASFSSSGFQKSDRYGGFGSGSRDGDGSKSGEDRFEPGKYKPRTTTPTTTTPGTASKKGSASSAPSRHGSTIQESSSKPSIKSA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028791`
TK1151 ID	TkA07G215890
OH-1004 ID	LXL04_028791
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028791

Location Chr06:63796192-63800676 (-)

Description Similar to EPSIN1: Clathrin interactor EPSIN 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11710`	May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes.	Arabidopsis EPSIN1 plays an important role in vacuolar trafficking of soluble cargo proteins in plant cells via interactions with clathrin, AP-1, VTI11, and VSR1.2006 · DOI: 10.1105/tpc.105.039123
`UniProt: Q67YI9`	May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes.	No verified direct reference in this release
`At3g59290`	Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028791 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006623 protein targeting to vacuole Biological Process

GO:0006897 endocytosis Biological Process

GO:0015031 protein transport Biological Process

GO:0072659 protein localization to plasma membrane Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005884 actin filament Cellular Component

KEGG gene cross-reference

ath:AT2G43160

ath:AT3G59290

ath:AT5G11710

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.639

Rank 1 · LXL04_028791 · OH-1004

Golgi apparatus0.344

Rank 2 · LXL04_028791 · OH-1004

Cell membrane0.166

Rank 3 · LXL04_028791 · OH-1004

Nucleus0.137

Rank 4 · LXL04_028791 · OH-1004

Endoplasmic reticulum0.087

Rank 5 · LXL04_028791 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01417.27ENTH27-147 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028791	`PF01417.27`	ENTH	27	147	1.8e-43	148.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VY07`	Arabidopsis thaliana	Clathrin interactor EPSIN 1	54.225%	Swiss-Prot	strong database homology
`Q67YI9`	Arabidopsis thaliana	Clathrin interactor EPSIN 2	51.835%	Swiss-Prot	weak database homology
`Q93YP4`	Arabidopsis thaliana	Clathrin interactor EPSIN 3	49.541%	Swiss-Prot	weak database homology

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