LXL04_028714 | RubberDandelionOmics

Gene overview

LXL04_028714

Reference: OH-1004 Chr: Chr06 Coordinates: 56783842-56793146 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4008 bp · LXL04_028714|LXL04_028714|OH1004|cDNA

ATGCTACGTCTGAAAGCATTTCGGCCTACGAATGACAAGATTGTGAAGATCCAATTGCACCCTACTCATCCGTGGCTTGTCACAGCTGATGCATCGGATCACGTCTCAGTCTGGAACTGGGAGCACCGCCAGGTGATATACGAGTTAAAAGCTGGGGGTGTTGATGAACGGCGTTTGGTTGGTGCCAAGCTAGAGAAACTTGCAGAGGGAGAATCAGAGTCTAAAGGGAAACCAACAGAAGCCCTACGTGGAGGGAGTGT...

CDS

Download CDS FASTA

4008 bp · LXL04_028714|LXL04_028714|OH1004|CDS

ATGCTACGTCTGAAAGCATTTCGGCCTACGAATGACAAGATTGTGAAGATCCAATTGCACCCTACTCATCCGTGGCTTGTCACAGCTGATGCATCGGATCACGTCTCAGTCTGGAACTGGGAGCACCGCCAGGTGATATACGAGTTAAAAGCTGGGGGTGTTGATGAACGGCGTTTGGTTGGTGCCAAGCTAGAGAAACTTGCAGAGGGAGAATCAGAGTCTAAAGGGAAACCAACAGAAGCCCTACGTGGAGGGAGTGT...

Protein

Download Protein FASTA

1335 aa · LXL04_028714|LXL04_028714|OH1004|PROTEIN

MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDERRLVGAKLEKLAEGESESKGKPTEALRGGSVRQVSFYDDDVRYWQLWRNRSAAAEPPSAVNQLTSAFNSPAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQDLDNRSLVCMEFLSKSSGGDGPLVAFGSSDGVIRVLSMITWKLVRRYTGGHKGSIACLMTFMASSGEALLVSGGSDGALVLWSADHGQDSRELVPKLSFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028714`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_028714`
Location	Chr06:56783842-56793146 (-)
Description	Similar to tstF: TSET complex member tstF
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_028714` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	ddi:DDB_G0287679 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.546

Rank 1 · LXL04_028714 · OH-1004

Golgi apparatus0.245

Rank 2 · LXL04_028714 · OH-1004

Nucleus0.202

Rank 3 · LXL04_028714 · OH-1004

Lysosome / Vacuole0.169

Rank 4 · LXL04_028714 · OH-1004

Cell membrane0.145

Rank 5 · LXL04_028714 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24807.2WD40_CDC20-Fz138-319 aa

PF25172.2Beta-prop_WDR3_2nd172-306 aa

PF25173.2Beta-prop_WDR3_1st180-299 aa

PF25175.2Beta-prop_WDR5180-306 aa

PF23381.2Beta-prop_IFT122_1st180-306 aa

PF24817.2WD40_WDHD1_1st180-304 aa

PF23393.3Beta-prop_WDR90_POC16_2nd183-304 aa

PF25174.2Beta-prop_THOC3229-305 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028714	`PF24807.2`	WD40_CDC20-Fz	138	319	2.5e-08	34.3
LXL04_028714	`PF25172.2`	Beta-prop_WDR3_2nd	172	306	5.4e-07	29.8
LXL04_028714	`PF25173.2`	Beta-prop_WDR3_1st	180	299	1.6e-10	41.7
LXL04_028714	`PF25175.2`	Beta-prop_WDR5	180	306	9.1e-10	39.0
LXL04_028714	`PF23381.2`	Beta-prop_IFT122_1st	180	306	5.6e-09	36.5
LXL04_028714	`PF24817.2`	WD40_WDHD1_1st	180	304	1.9e-08	34.6
LXL04_028714	`PF23393.3`	Beta-prop_WDR90_POC16_2nd	183	304	2.5e-06	27.7
LXL04_028714	`PF25174.2`	Beta-prop_THOC3	229	305	1.1e-12	48.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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