LXL04_028549 | RubberDandelionOmics

Gene overview

LXL04_028549

Reference: OH-1004 Chr: Chr06 Coordinates: 45364223-45369948 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2532 bp · LXL04_028549|LXL04_028549|OH1004|cDNA

ATGAAGGTGGTTGGATTGGATTATTATAGTACGACAGGGCGGATGATGATGCCAAATGAGGAATCTTCAAAGATAGCCATTGATGACTTTGGAAGCTCAAGGCTATTGCACGACATTGAAGAAATAAGCAAAGCATTATATCTTCACGACACCCCACCAAAGATACCAGATCAAACCCCACGAAAAACAAACCATACAAATGATGATCTCTTACCAAATCACAAGAAATCTTCTATATGGAAATGGAAGCCTTTAAAAGC...

CDS

Download CDS FASTA

2532 bp · LXL04_028549|LXL04_028549|OH1004|CDS

ATGAAGGTGGTTGGATTGGATTATTATAGTACGACAGGGCGGATGATGATGCCAAATGAGGAATCTTCAAAGATAGCCATTGATGACTTTGGAAGCTCAAGGCTATTGCACGACATTGAAGAAATAAGCAAAGCATTATATCTTCACGACACCCCACCAAAGATACCAGATCAAACCCCACGAAAAACAAACCATACAAATGATGATCTCTTACCAAATCACAAGAAATCTTCTATATGGAAATGGAAGCCTTTAAAAGC...

Protein

Download Protein FASTA

843 aa · LXL04_028549|LXL04_028549|OH1004|PROTEIN

MKVVGLDYYSTTGRMMMPNEESSKIAIDDFGSSRLLHDIEEISKALYLHDTPPKIPDQTPRKTNHTNDDLLPNHKKSSIWKWKPLKALTHFHNHKITSSFFLHVHSIEGLPLNFNDLSLCVYWKRKHEVLKTRSIRVKEGVAGFEETLTHKCSIYIGKTDHDNVAKYEPKLSLLYVSIVGVPSLDLGNHWIDLTRLLPLTSMELEEEKNRNGKWKTSFKLTGKAKGAIINVSFGFSLSGNLDKIPNKENRNLGRLQRVRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028549`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028549

Location Chr06:45364223-45369948 (-)

Description Similar to PMIR2: Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g26160`	Seems not necessary for chloroplast and nuclear photorelocation movements.	PLASTID MOVEMENT IMPAIRED1 and PLASTID MOVEMENT IMPAIRED1-RELATED1 Mediate Photorelocation Movements of Both Chloroplasts and Nuclei.2015 · DOI: 10.1104/pp.15.00214
`At5g20610`	Together with PMI1, necessary for chloroplast and nuclear photorelocation movements via the regulation of chloroplast-actin (cp- actin) filaments in pavement cells.	PLASTID MOVEMENT IMPAIRED1 and PLASTID MOVEMENT IMPAIRED1-RELATED1 Mediate Photorelocation Movements of Both Chloroplasts and Nuclei.2015 · DOI: 10.1104/pp.15.00214
`At1g42550`	Necessary for chloroplast and nuclear photorelocation movements via the regulation of chloroplast-actin (cp-actin) filaments in mesophyll cells, and together with PMIR1, in pavement cells.	A plant-specific protein essential for blue-light-induced chloroplast movements.2005 · DOI: 10.1104/pp.105.061887

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028549 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0009637 response to blue light Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009787 regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009902 chloroplast relocation Biological Process

GO:0009903 chloroplast avoidance movement Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0030048 actin filament-based movement Biological Process

GO:0031022 nuclear migration along microfilament Biological Process

GO:1902265 abscisic acid homeostasis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G42550

ath:AT5G20610

ath:AT5G26160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.381

Rank 1 · LXL04_028549 · OH-1004

Nucleus0.352

Rank 2 · LXL04_028549 · OH-1004

Cell membrane0.282

Rank 3 · LXL04_028549 · OH-1004

Endoplasmic reticulum0.090

Rank 4 · LXL04_028549 · OH-1004

Plastid0.073

Rank 5 · LXL04_028549 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10358.16NT-C295-239 aa

PF21745.3PMI1_PMIR1-2_C567-630 aa

PF21745.3PMI1_PMIR1-2_C632-679 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028549	`PF10358.16`	NT-C2	95	239	2.2e-17	63.7
LXL04_028549	`PF21745.3`	PMI1_PMIR1-2_C	567	630	9.9e-22	78.8
LXL04_028549	`PF21745.3`	PMI1_PMIR1-2_C	632	679	9.9e-22	78.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7Y219`	Arabidopsis thaliana	Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 2	32.000%	Swiss-Prot	moderate database homology
`F4K5K6`	Arabidopsis thaliana	Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1	36.881%	Swiss-Prot	weak database homology
`Q9C8E6`	Arabidopsis thaliana	Protein PLASTID MOVEMENT IMPAIRED 1	21.893%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card