LXL04_028525 | RubberDandelionOmics

Gene overview

LXL04_028525

Reference: OH-1004 Chr: Chr06 Coordinates: 44499732-44500181 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

450 bp · LXL04_028525|LXL04_028525|OH1004|cDNA

ATGATGCACATGACCTTCTACTGGGGCCGCAACGTCACTCTGCTTTTCGATTTGTGGAAGACCGACTCATGGTTCAGTTACTCTCTCACCTTAATCGCCTGCCTCCTTTTCTCCGTCTTCTACCAATACATGGAAGATCGCCGTCTCCGATTCAAGCTCCTCTCTTCCTCCGCCGTTAGCAGCAATACCGATGGAGCTGTGGACTCCACTCCTCTCCTCAAGACCAAGATATTCGCCCGCGGTAGCCGGTGGAGTTTAGG...

CDS

Download CDS FASTA

450 bp · LXL04_028525|LXL04_028525|OH1004|CDS

ATGATGCACATGACCTTCTACTGGGGCCGCAACGTCACTCTGCTTTTCGATTTGTGGAAGACCGACTCATGGTTCAGTTACTCTCTCACCTTAATCGCCTGCCTCCTTTTCTCCGTCTTCTACCAATACATGGAAGATCGCCGTCTCCGATTCAAGCTCCTCTCTTCCTCCGCCGTTAGCAGCAATACCGATGGAGCTGTGGACTCCACTCCTCTCCTCAAGACCAAGATATTCGCCCGCGGTAGCCGGTGGAGTTTAGG...

Protein

Download Protein FASTA

149 aa · LXL04_028525|LXL04_028525|OH1004|PROTEIN

MMHMTFYWGRNVTLLFDLWKTDSWFSYSLTLIACLLFSVFYQYMEDRRLRFKLLSSSAVSSNTDGAVDSTPLLKTKIFARGSRWSLGRFTGSVLFGINSALGYFLMLAIMSFNAGVFVAIVFGLATGYLLFRSGDDEQVVVVDNPCACA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028525`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028525

Location Chr06:44499732-44500181 (+)

Description Similar to COPT5: Copper transporter 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20650`	Involved in the transport of copper.	No verified direct reference in this release
`At2g26975`	Involved in the transport of copper.	No verified direct reference in this release
`At5g59040`	Involved in the transport of copper.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0440700`	Involved in the transport of copper.	No verified direct reference in this release
`Os01g0770700`	Involved in the transport of copper, in cooperation with SWEET11 and COPT2.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028525 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006825 copper ion transport Biological Process

GO:0006952 defense response Biological Process

GO:0035434 copper ion transmembrane transport Biological Process

GO:0051604 protein maturation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005770 late endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0005375 copper ion transmembrane transporter activity Molecular Function

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G26975

ath:AT5G20650

ath:AT5G59040

dosa:Os01g0770700

dosa:Os09g0440700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.424

Rank 1 · LXL04_028525 · OH-1004

Golgi apparatus0.219

Rank 2 · LXL04_028525 · OH-1004

Endoplasmic reticulum0.196

Rank 3 · LXL04_028525 · OH-1004

Cytoplasm0.136

Rank 4 · LXL04_028525 · OH-1004

Cell membrane0.103

Rank 5 · LXL04_028525 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04145.21Ctr4-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028525	`PF04145.21`	Ctr	4	131	3.1e-21	77.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93VM8`	Arabidopsis thaliana	Copper transporter 5	54.967%	Swiss-Prot	strong database homology
`Q8GWP3`	Arabidopsis thaliana	Copper transporter 6	29.861%	Swiss-Prot	weak database homology
`Q9FGU8`	Arabidopsis thaliana	Copper transporter 3	31.579%	Swiss-Prot	moderate database homology
`Q69P80`	Oryza sativa subsp. japonica	Copper transporter 5.1	56.579%	Swiss-Prot	strong database homology
`Q94EE4`	Oryza sativa subsp. japonica	Copper transporter 1	31.061%	Swiss-Prot	moderate database homology

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