LXL04_028484 | RubberDandelionOmics

Gene overview

LXL04_028484

Reference: OH-1004 Chr: Chr06 Coordinates: 43303966-43306772 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · LXL04_028484|LXL04_028484|OH1004|cDNA

ATGGGAATTTGTTTCAGTTCTGAATACGATGCAAAACAGTGTTTCCAGACCACAAAAGGTGAATTTGGACCACATGGAAACAAAGCAATATGTGCATCAACAATTGCACCAAGAACTATAGTGATCACCAAAGATGTTAAATCTCTTCGCAAGAATCCTGCATATGGCAATCTCGATGTTTTTACATATGAAGAGATGCAAATTGCCACCAAAGCTTTTAGACCGGATCAAGTTTTAGGTGTGGGCGGTTTTGGAATTGT...

CDS

Download CDS FASTA

1017 bp · LXL04_028484|LXL04_028484|OH1004|CDS

ATGGGAATTTGTTTCAGTTCTGAATACGATGCAAAACAGTGTTTCCAGACCACAAAAGGTGAATTTGGACCACATGGAAACAAAGCAATATGTGCATCAACAATTGCACCAAGAACTATAGTGATCACCAAAGATGTTAAATCTCTTCGCAAGAATCCTGCATATGGCAATCTCGATGTTTTTACATATGAAGAGATGCAAATTGCCACCAAAGCTTTTAGACCGGATCAAGTTTTAGGTGTGGGCGGTTTTGGAATTGT...

Protein

Download Protein FASTA

338 aa · LXL04_028484|LXL04_028484|OH1004|PROTEIN

MGICFSSEYDAKQCFQTTKGEFGPHGNKAICASTIAPRTIVITKDVKSLRKNPAYGNLDVFTYEEMQIATKAFRPDQVLGVGGFGIVYKGVIDENVRPFYSKIQVAIKQLDPEGIQGDKEWLAEVNYLGQLQHPNLVKLIGYCCEEHHRASVILSWSKRIKIALDAAKGLDFLHDAECPIIYRDFKTSNILLDREFNAKLSDFGLAKDGPMGDDTHVSTRVMGTYGYAAPEYISTGHLTTRSDIYGFGVVLLEMLIGRKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028484`
TK1151 ID	TkA07G161890
OH-1004 ID	LXL04_028484
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.400
Protein coverage (%)	TK1151 100.000 / OH-1004 80.769 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028484

Location Chr06:43303966-43306772 (+)

Description Similar to PBL17: Probable serine/threonine-protein kinase PBL17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g07180`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g01020`	May be involved in plant defense signaling.	No verified direct reference in this release
`At2g05940`	Serine/threonine-protein kinase involved in disease resistance.	xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 Pseudomonas syringae Effector AvrPphB Suppresses AvrB-Induced Activation of RPM1 but Not AvrRpm1-Induced Activation.2015 · DOI: 10.1094/mpmi-08-14-0248-r
`At5g02290`	May play a role in the regulation of plant growth and development (Probable).	No verified direct reference in this release
`At1g07570`	Possible bi-functional kinase.	Novel protein kinase of Arabidopsis thaliana (APK1) that phosphorylates tyrosine, serine and threonine.1992 · DOI: 10.1007/bf00046450

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028484 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0032491 detection of molecule of fungal origin Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process

GO:1903428 positive regulation of reactive oxygen species biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G07570

ath:AT2G05940

ath:AT2G07180

ath:AT5G01020

ath:AT5G02290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.688

Rank 1 · LXL04_028484 · OH-1004

Cytoplasm0.230

Rank 2 · LXL04_028484 · OH-1004

Nucleus0.202

Rank 3 · LXL04_028484 · OH-1004

Endoplasmic reticulum0.044

Rank 4 · LXL04_028484 · OH-1004

Golgi apparatus0.028

Rank 5 · LXL04_028484 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr76-154 aa

PF00069.32Pkinase76-329 aa

PF07714.24PK_Tyr_Ser-Thr154-331 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028484	`PF07714.24`	PK_Tyr_Ser-Thr	76	154	1.8e-37	129.7
LXL04_028484	`PF00069.32`	Pkinase	76	329	2.2e-37	129.6
LXL04_028484	`PF07714.24`	PK_Tyr_Ser-Thr	154	331	1.8e-37	129.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H1E3`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL17	59.249%	Swiss-Prot	strong database homology
`Q8GXZ3`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL8	62.126%	Swiss-Prot	strong database homology
`Q9ZUF4`	Arabidopsis thaliana	Serine/threonine-protein kinase RIPK	59.468%	Swiss-Prot	strong database homology
`P43293`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL11	56.393%	Swiss-Prot	strong database homology
`Q06548`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL9	50.959%	Swiss-Prot	strong database homology

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