LXL04_028355 | RubberDandelionOmics

Gene overview

LXL04_028355

Reference: OH-1004 Chr: Chr06 Coordinates: 38855913-38859896 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2121 bp · LXL04_028355|LXL04_028355|OH1004|cDNA

ATGCAATCCAACTCCGTGAAGATTTCGCCGCTTGATCTGATGAGTGCGCTTCTTAACGGCAAAGTTTTCGACACATCGAACGCATCGGAATCGGGAGAATCTATGGTGCCGCCAGCGTTGGCGATGCTTATGGAGAACCGTGAGTTGTTGATGATACTTACGACGTCAGTTGCTGTGTTGATTGGATGCGTTGTCGTTTTTGTGTGGCGGAGATCATCCACAAAGAAGTCGGCTAAGGAATTGGAGTCACCGGTGATTGT...

CDS

Download CDS FASTA

2121 bp · LXL04_028355|LXL04_028355|OH1004|CDS

ATGCAATCCAACTCCGTGAAGATTTCGCCGCTTGATCTGATGAGTGCGCTTCTTAACGGCAAAGTTTTCGACACATCGAACGCATCGGAATCGGGAGAATCTATGGTGCCGCCAGCGTTGGCGATGCTTATGGAGAACCGTGAGTTGTTGATGATACTTACGACGTCAGTTGCTGTGTTGATTGGATGCGTTGTCGTTTTTGTGTGGCGGAGATCATCCACAAAGAAGTCGGCTAAGGAATTGGAGTCACCGGTGATTGT...

Protein

Download Protein FASTA

706 aa · LXL04_028355|LXL04_028355|OH1004|PROTEIN

MQSNSVKISPLDLMSALLNGKVFDTSNASESGESMVPPALAMLMENRELLMILTTSVAVLIGCVVVFVWRRSSTKKSAKELESPVIVVPKRVQEEEVDDGKTKVTVFFGTQTGTAEGFAKALVEEAKARYEKAVFRIIDMDDYAADDDEYEEKLKKESLAFFFLATYGDGEPTDNAARFYKWFTEGEEKGEWLPKLKYGVFGLGNRQYEHFNKIAKVVDDNLAEAGAKRLVPVGLGDDDQCIEDDFTAWKELVWPELDQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028355`
TK1151 ID	TkA07G145940
OH-1004 ID	LXL04_028355
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028355

Location Chr06:38855913-38859896 (-)

Description Similar to CPR: NADPH--cytochrome P450 reductase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30210`	This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0558900`	This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes (By similarity).	Rice P450 reductases differentially affect P450-mediated metabolism in bacterial expression systems.2013 · DOI: 10.1007/s00449-012-0787-0

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028355 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009698 phenylpropanoid metabolic process Biological Process

GO:0051762 sesquiterpene biosynthetic process Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003958 NADPH-hemoprotein reductase activity Molecular Function

GO:0010181 FMN binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0050660 flavin adenine dinucleotide binding Molecular Function

GO:0050661 NADP binding Molecular Function

KEGG gene cross-reference

ath:AT4G30210

dosa:Os09g0558900

osa:4347838

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.334

Rank 1 · LXL04_028355 · OH-1004

Cytoplasm0.289

Rank 2 · LXL04_028355 · OH-1004

Mitochondrion0.213

Rank 3 · LXL04_028355 · OH-1004

Nucleus0.140

Rank 4 · LXL04_028355 · OH-1004

Golgi apparatus0.129

Rank 5 · LXL04_028355 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00258.31Flavodoxin_1106-249 aa

PF00667.27FAD_binding_1302-523 aa

PF00175.27NAD_binding_1560-670 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028355	`PF00258.31`	Flavodoxin_1	106	249	2.9e-33	115.7
LXL04_028355	`PF00667.27`	FAD_binding_1	302	523	5.8e-71	239.3
LXL04_028355	`PF00175.27`	NAD_binding_1	560	670	3.1e-18	67.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SUM3`	Arabidopsis thaliana	NADPH--cytochrome P450 reductase 2	72.199%	Swiss-Prot	strong database homology
`Q653S9`	Oryza sativa subsp. japonica	NADPH--cytochrome P450 reductase 3	70.070%	Swiss-Prot	strong database homology

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